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Aliases for RNU4-16P Gene

Subcategory (RNA class) for RNU4-16P Gene

snRNA

Aliases for RNU4-16P Gene

  • RNA, U4 Small Nuclear 16, Pseudogene 2 3 5

External Ids for RNU4-16P Gene

ORGUL Members for RNU4-16P Gene

Previous GeneCards Identifiers for RNU4-16P Gene

  • GC07P094730

Summaries for RNU4-16P Gene

GeneCards Summary for RNU4-16P Gene

RNU4-16P (RNA, U4 Small Nuclear 16, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4-16P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-16P Gene

Genomics for RNU4-16P Gene

GeneHancer (GH) Regulatory Elements for RNU4-16P Gene

Promoters and enhancers for RNU4-16P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I095098 Enhancer 0.2 ENCODE 550.8 +0.8 846 1.3 GC07P095099 RNU4-16P PPP1R9A LOC105375405
GH07I095096 Enhancer 0.2 ENCODE 550.8 -1.7 -1740 1 GC07P095099 RNU4-16P HINT1P2 LOC105375405 PPP1R9A
GH07I095066 Enhancer 1 ENCODE dbSUPER 11.4 -30.9 -30859 1.5 ELF3 PKNOX1 FOXA2 ZNF133 MZF1 FEZF1 ZIC2 HIC1 CTBP1 POLR2A RNU4-16P PPP1R9A GC07P095099 HINT1P2 LOC105375405
GH07I095246 Enhancer 1 Ensembl ENCODE 9.4 +148.8 148809 0.5 CTCF PKNOX1 RB1 FEZF1 ZNF2 RAD21 POLR2A ZNF366 ZNF143 SMC3 GC07M095243 PON1 PON3 RNU4-16P GC07P095276 PPP1R9A
GH07I095046 Enhancer 0.7 ENCODE dbSUPER 11.7 -50.9 -50911 2.3 OSR2 KLF1 FOXP1 SPI1 RNU4-16P PPP1R9A HINT1P2 GC07P095099 LOC105375405
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-16P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-16P Gene

Genomic Locations for RNU4-16P Gene
chr7:95,098,227-95,098,367
(GRCh38/hg38)
Size:
141 bases
Orientation:
Plus strand
chr7:94,727,539-94,727,679
(GRCh37/hg19)

Genomic View for RNU4-16P Gene

Genes around RNU4-16P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-16P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-16P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-16P Gene

Proteins for RNU4-16P Gene

Post-translational modifications for RNU4-16P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-16P Gene

Domains & Families for RNU4-16P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-16P Gene

Function for RNU4-16P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-16P Gene

Localization for RNU4-16P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-16P Gene

Pathways & Interactions for RNU4-16P Gene

SuperPathways for RNU4-16P Gene

No Data Available

Interacting Proteins for RNU4-16P Gene

Gene Ontology (GO) - Biological Process for RNU4-16P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-16P Gene

Drugs & Compounds for RNU4-16P Gene

No Compound Related Data Available

Transcripts for RNU4-16P Gene

mRNA/cDNA for RNU4-16P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-16P Gene

No ASD Table

Relevant External Links for RNU4-16P Gene

GeneLoc Exon Structure for
RNU4-16P
ECgene alternative splicing isoforms for
RNU4-16P

Expression for RNU4-16P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-16P Gene

genes like me logo Genes that share expression patterns with RNU4-16P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-16P Gene

Orthologs for RNU4-16P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-16P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U4 34
  • 85 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U4 34
  • 83 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U4 34 34 34
  • 82 (a)
ManyToMany
Species where no ortholog for RNU4-16P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4-16P Gene

ENSEMBL:
Gene Tree for RNU4-16P (if available)
TreeFam:
Gene Tree for RNU4-16P (if available)

Paralogs for RNU4-16P Gene

No data available for Paralogs for RNU4-16P Gene

Variants for RNU4-16P Gene

Additional Variant Information for RNU4-16P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-16P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-16P Gene

Disorders for RNU4-16P Gene

No disorders were found for RNU4-16P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-16P Gene

Publications for RNU4-16P Gene

No publications were found for RNU4-16P Gene.

Products for RNU4-16P Gene

Sources for RNU4-16P Gene

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