Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU4-1 Gene

Subcategory (RNA class) for RNU4-1 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU4-1 Gene

  • RNA, U4 Small Nuclear 1 2 3
  • RNA, U4B2 Small Nuclear 2 3
  • RNA, U4A Small Nuclear 2 3
  • RNU4B2 3
  • RNU4A 3
  • U4BL 3
  • U4 3

External Ids for RNU4-1 Gene

ORGUL Members for RNU4-1 Gene

Previous Symbols for RNU4-1 Gene

  • RNU4B2
  • RNU4A

Summaries for RNU4-1 Gene

GeneCards Summary for RNU4-1 Gene

RNU4-1 (RNA, U4 Small Nuclear 1) is a RNA Gene, and belongs to snRNA RNA class. Among its related pathways are Spliceosomal Splicing Cycle.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-1 Gene

Genomics for RNU4-1 Gene

Genomic Location for RNU4-1 Gene

Start:
120,293,094 bp from pter
End:
120,293,237 bp from pter
Size:
144 bases
Orientation:
Minus strand

Genomic View for RNU4-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU4-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-1 Gene

Proteins for RNU4-1 Gene

Post-translational modifications for RNU4-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-1 Gene

Domains for RNU4-1 Gene

Gene Families for RNU4-1 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs
genes like me logo Genes that share domains with RNU4-1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for RNU4-1 Gene

Function for RNU4-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU4-1 Gene

Localization for RNU4-1 Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU4-1 Gene

Pathways for RNU4-1 Gene

SuperPathways for RNU4-1 Gene

Superpath Contained pathways
1 Spliceosomal Splicing Cycle
genes like me logo Genes that share pathways with RNU4-1: view

Pathways by source for RNU4-1 Gene

1 Qiagen pathway for RNU4-1 Gene

Interacting Proteins for RNU4-1 Gene

Gene Ontology (GO) - Biological Process for RNU4-1 Gene

None

Transcripts for RNU4-1 Gene

mRNA/cDNA for RNU4-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-1 Gene

No ASD Table

Relevant External Links for RNU4-1 Gene

GeneLoc Exon Structure for
RNU4-1
ECgene alternative splicing isoforms for
RNU4-1

Expression for RNU4-1 Gene

mRNA expression in normal human tissues for RNU4-1 Gene

mRNA differential expression in normal tissues according to GTEx for RNU4-1 Gene

This gene is overexpressed in Testis (6.2), Whole Blood (4.8), and Pancreas (4.1).
genes like me logo Genes that share expressions with RNU4-1: view

Orthologs for RNU4-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U4 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U4 37
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24265 37
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U4 37
  • 97 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U4 37
  • 94 (a)
ManyToMany
U4 37
  • 95 (a)
ManyToMany
U4 37
  • 91 (a)
ManyToMany
Species with no ortholog for RNU4-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4-1 Gene

ENSEMBL:
Gene Tree for RNU4-1 (if available)
TreeFam:
Gene Tree for RNU4-1 (if available)

Paralogs for RNU4-1 Gene

No data available for Paralogs for RNU4-1 Gene

Variants for RNU4-1 Gene

Relevant External Links for RNU4-1 Gene

HapMap Linkage Disequilibrium report
RNU4-1

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RNU4-1 Gene

Disorders for RNU4-1 Gene

No disorders were found for RNU4-1 Gene.

No data available for UniProtKB/Swiss-Prot for RNU4-1 Gene

Publications for RNU4-1 Gene

  1. Genes for human U4 small nuclear RNA. (PMID: 3582982) Bark C. … Pettersson U. (Gene 1986) 2 3
  2. Primary and secondary structures of chicken, rat and man nuclear U4 RNAs. Homologies with U1 and U5 RNAs. (PMID: 6169000) Krol A. … Jacob M. (Nucleic Acids Res. 1981) 3
  3. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  4. NMR structure of the 3' stem-loop from human U4 snRNA. (PMID: 12384583) Comolli L.R. … Gmeiner W.H. (Nucleic Acids Res. 2002) 3
  5. U4 small nuclear RNA can function in both the major and minor spliceosomes. (PMID: 14691257) Shukla G.C. … Padgett R.A. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3

Products for RNU4-1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNU4-1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNU4-1
    • Block miRNA regulation of RNU4-1 using miScript Target Protectors

    Sources for RNU4-1 Gene

    Back to Top

    Content