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Aliases for RNU3P1 Gene

Subcategory (RNA class) for RNU3P1 Gene

snoRNA

Aliases for RNU3P1 Gene

  • RNA, U3 Small Nucleolar Pseudogene 1 2 3
  • U3 3 5
  • RNA, U3 Small Nuclear Pseudogene 1 3
  • Small Nucleolar RNA U3 5

External Ids for RNU3P1 Gene

ORGUL Members for RNU3P1 Gene

Previous GeneCards Identifiers for RNU3P1 Gene

  • GC00U990315
  • GC15U900817
  • GC15M059054

Summaries for RNU3P1 Gene

GeneCards Summary for RNU3P1 Gene

RNU3P1 (RNA, U3 Small Nucleolar Pseudogene 1) is a Pseudogene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU3P1 Gene

Genomics for RNU3P1 Gene

Regulatory Elements for RNU3P1 Gene

Enhancers for RNU3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F058228 1.6 FANTOM5 Ensembl ENCODE 12 +531.1 531121 2.9 HDGF PKNOX1 ATF1 ARNT CREB3L1 ZNF766 GATA2 CBX5 FOS KDM4B FAM63B LOC101928725 RNU3P1 LIPC GC15M058232 RPL28P4
GH15F058457 1.7 FANTOM5 Ensembl ENCODE 10.6 +301.6 301603 4.0 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF207 FOS LIPC ADAM10 AQP9 RNU3P1 FAM63B LOC101928725 SLTM ENSG00000277790 ALDH1A2
GH15F058515 1.7 FANTOM5 Ensembl ENCODE 10.2 +238.4 238388 13.7 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B DMAP1 YY1 FOS AQP9 ADAM10 SLTM LIPC RNU3P1 FAM63B LOC101928725 ENSG00000225798 RNF111 LOC101928668
GH15F058723 1.3 FANTOM5 Ensembl ENCODE 12.2 +35.1 35081 4.0 HDAC1 PKNOX1 MTA2 MAX ELF1 EBF1 TBX21 RFX5 IKZF1 PBX2 ADAM10 FAM63B RNU3P1 LOC101928725 ENSG00000278513 RN7SKP95
GH15F058438 1.4 FANTOM5 Ensembl ENCODE 10.8 +318.7 318657 7.2 THRB BRCA1 RAD21 RARA YY1 FOS SMARCC1 CEBPB REST PPARG LIPC RNU3P1 FAM63B LOC101928725 ENSG00000277229
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU3P1 Gene

Chromosome:
15
Start:
58,760,466 bp from pter
End:
58,760,681 bp from pter
Size:
216 bases
Orientation:
Minus strand

Genomic View for RNU3P1 Gene

Genes around RNU3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU3P1 Gene

Proteins for RNU3P1 Gene

Post-translational modifications for RNU3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU3P1 Gene

Domains & Families for RNU3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU3P1 Gene

Function for RNU3P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU3P1 Gene

Localization for RNU3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU3P1 Gene

Pathways & Interactions for RNU3P1 Gene

SuperPathways for RNU3P1 Gene

No Data Available

Interacting Proteins for RNU3P1 Gene

Gene Ontology (GO) - Biological Process for RNU3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU3P1 Gene

Transcripts for RNU3P1 Gene

mRNA/cDNA for RNU3P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU3P1 Gene

No ASD Table

Relevant External Links for RNU3P1 Gene

GeneLoc Exon Structure for
RNU3P1
ECgene alternative splicing isoforms for
RNU3P1

Expression for RNU3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU3P1 Gene:

RNU3P1
genes like me logo Genes that share expression patterns with RNU3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU3P1 Gene

Orthologs for RNU3P1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU3P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U3 35
  • 99 (a)
OneToOne
Species where no ortholog for RNU3P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU3P1 Gene

ENSEMBL:
Gene Tree for RNU3P1 (if available)
TreeFam:
Gene Tree for RNU3P1 (if available)

Paralogs for RNU3P1 Gene

No data available for Paralogs for RNU3P1 Gene

Variants for RNU3P1 Gene

Relevant External Links for RNU3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU3P1 Gene

Disorders for RNU3P1 Gene

No disorders were found for RNU3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU3P1 Gene

Publications for RNU3P1 Gene

  1. Genes for human U3 small nucleolar RNA contain highly conserved flanking sequences. (PMID: 2719960) Yuan Y. … Reddy R. (Biochim. Biophys. Acta 1989) 2 3 64

Products for RNU3P1 Gene

Sources for RNU3P1 Gene

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