RNU3P1 Gene
pseudogene GIFtS: 14
GCID: GC15M059054
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RNA, U3 small nucleolar pseudogene 1
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Aliases
for RNU3P1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): snoRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| RNA, U3 Small Nucleolar Pseudogene 11 2 | | U31 2 |
| External Ids: | HGNC: 101751 | Entrez Gene: 60682 | Ensembl: ENSG000002003187 |
Export aliases for RNU3P1 gene to outside databasesPrevious GC identifers: GC00U990315 GC15U900817
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Summaries
for RNU3P1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Genomic Views
for RNU3P1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for RNU3P1
Other transcription factors
Search SABiosciences Chromatin IP Primers for RNU3P1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU3P1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 15q22.1 Ensembl cytogenetic band: 15q21.3 HGNC cytogenetic band: 15q22.1RNU3P1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 15 GeneLoc Exon Structure GeneLoc location for GC15M059054: view genomic region
(about GC identifiers)
Start:
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59,052,665 bp from pter |
End:
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59,052,880 bp from pter |
Size:
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216 bases |
Orientation:
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minus strand |
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Proteins
for RNU3P1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for RNU3P1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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Function
for RNU3P1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Pathways & Interactions
for RNU3P1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNU3P1
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Drugs & Compounds
for RNU3P1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RNU3P1
Search CenterWatch for drugs/clinical trials and news about RNU3P1 
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Transcripts
for RNU3P1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000363448(snoRNA)
GeneLoc Exon Structure
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Expression
for RNU3P1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RNU3P1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for RNU3P1
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNU3P1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU3P1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU3P1 |
Orthologs
for RNU3P1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for RNU3P1 (if available)
TreeFam Gene Tree for RNU3P1 (if available) |
Paralogs
for RNU3P1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RNU3P1 gene
- ENSG000002521892 ENSG000002214612 ENSG000002226662 ENSG000002125392 ENSG000002525432 ENSG000002214552 ENSG000002529212 ENSG000001999272
- ENSG000002525362 ENSG000002000422 ENSG000002522992 ENSG000002125112 ENSG000002124222 ENSG000002022332 ENSG000002024822 ENSG000001997272
- ENSG000002013292 ENSG000002529812 ENSG000002517932 RNU3P22 ENSG000002067612 ENSG000002212522 ENSG000001998512 ENSG000002210432
- ENSG000002530912 ENSG000002527922 ENSG000002526832 ENSG000002520482 ENSG000002210442 ENSG000002121952 ENSG000002124792 ENSG000002210402
- ENSG000002518362 ENSG000002214962 ENSG000001997692 ENSG000002126102 ENSG000002022682 ENSG000001996662 ENSG000001998562 ENSG000002123002
- ENSG000002006932 ENSG000002518002 ENSG000002519302 ENSG000002002222 ENSG000002530142 ENSG000002522412 ENSG000002016742 ENSG000002004922
- ENSG000002013682 ENSG000002213452 ENSG000001993702 ENSG000002125382 ENSG000002214002 ENSG000002382972 ENSG000002528052 ENSG000002216382
- ENSG000002005382 ENSG000002005452 ENSG000002530092 ENSG000002124342 ENSG000002527092 ENSG000002013462 ENSG000002521752 ENSG000002216332
- ENSG000002519792 ENSG000002216732 ENSG000002125982 ENSG000002123212 ENSG000002123672 ENSG000002211252 ENSG000002530522 ENSG000002121822
- ENSG000002122112 ENSG000002517492 ENSG000002072152 ENSG000002125512 ENSG000002524402 ENSG000002213322 ENSG000002121652 ENSG000002526692
- ENSG000002071192
RNU3P1 for paralogs About GeneDecksing
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Genomic Variants
for RNU3P1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for RNU3P1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for RNU3P1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed article for RNU3P1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RNU3P1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Genes for human U3 small nucleolar RNA contain highly conserved flanking sequences. (PubMed id 2719960)1, 3 Yuan Y. and Reddy R. (1989)
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External Searches for RNU3P1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing RNU3P1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing RNU3P1 gene
(According to HUGE)
About This Section
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Specialized Databases showing RNU3P1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for RNU3P1 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for RNU3P1 gene:
Search GeneIP for patents involving RNU3P1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for RNU3P1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNU3P1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNU3P1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU3P1 | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNU3P1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU3P1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU3P1 |
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| | | | Search Tocris compounds for RNU3P1 |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for RNU3P1 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNU3P1 |
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Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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