RNU2-7P Gene
pseudogene GIFtS : 11 GCID: GC13 P021187
RNA, U2 small nuclear 7, pseudogene
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Aliasesfor RNU2-7P gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Subcategory (RNA class): snRNAQuality score for the ORGUL clustered with this gene is 4 Aliases RNA, U2 Small Nuclear 7, Pseudogene 1 2
External Ids: HGNC: 42505 1 Entrez Gene: 100873824 2 Ensembl: ENSG00000222726 7 Export aliases for RNU2-7P gene to outside databases Previous GC identifer: GC00U933674
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Summariesfor RNU2-7P gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section fRNAdb sequence ontology for RNU2-7P: U2 spliceosomal RNA - U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenosine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.
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Genomic Viewsfor RNU2-7P gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for RNU2-7P Other transcription factors Search SABiosciences Chromatin IP Primers for RNU2-7P Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU2-7P
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Ensembl cytogenetic band: 13q12.11 HGNC cytogenetic band: 13q12.11 RNU2-7P Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 13 GeneLoc Exon Structure
GeneLoc location for GC13P021187: view genomic region
(about GC identifiers )
Start: 21,186,300 bp from pter End:
21,186,477 bp from pter
Size: 178 bases Orientation:
plus strand
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Proteinsfor RNU2-7P gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB: --
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Protein
Domains /for RNU2-7P gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Functionfor RNU2-7P gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
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Pathways & Interactionsfor RNU2-7P gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNU2-7P
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Drugs & Compoundsfor RNU2-7P gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RNU2-7P RNU2-7P
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Transcriptsfor RNU2-7P gene (Secondary structures according to
fRNAdb ,Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,EMD Millipore ,
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000410794(snRNA) GeneLoc Exon Structure
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Expression for RNU2-7P gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RNU2-7P expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for RNU2-7P Primer Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNU2-7P Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU2-7P Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU2-7P
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Orthologsfor RNU2-7P gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
ENSEMBL Gene Tree for RNU2-7P (if available)TreeFam Gene Tree for RNU2-7P (if available)
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Paralogsfor RNU2-7P gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RNU2-7P gene ENSG00000251877 2 ENSG00000223247 2 ENSG00000222357 2 ENSG00000222640 2 ENSG00000253025 2 ENSG00000251718 2 ENSG00000252847 2 ENSG00000252343 2 ENSG00000223125 2 ENSG00000252468 2 ENSG00000222389 2 ENSG00000222440 2 ENSG00000223327 2 ENSG00000252635 2 ENSG00000222477 2 ENSG00000238850 2 ENSG00000222923 2 ENSG00000222426 2 ENSG00000222238 2 ENSG00000239122 2 ENSG00000222800 2 ENSG00000222536 2 ENSG00000222222 2 RNU2-5P 2 LOC100128988 2 ENSG00000222276 2 ENSG00000222659 2 ENSG00000222094 2 ENSG00000252066 2 ENSG00000222650 2 ENSG00000223107 2 ENSG00000223001 2 ENSG00000222126 2 ENSG00000222644 2 RNU2-6P 2 ENSG00000223156 2 ENSG00000252639 2 ENSG00000222985 2 ENSG00000253097 2 ENSG00000251994 2 ENSG00000222788 2 ENSG00000222973 2 ENSG00000222810 2 ENSG00000222765 2 ENSG00000222624 2 ENSG00000222414 2 RNU2-3P 2 ENSG00000252212 2 ENSG00000222293 2 ENSG00000252604 2 ENSG00000252018 2 LOC100418727 2 ENSG00000238471 2 ENSG00000222724 2 ENSG00000252255 2 ENSG00000222729 2 ENSG00000222598 2 ENSG00000253099 2 RNU2-2 2 ENSG00000222627 2 RNU2-4P 2 ENSG00000252184 2 ENSG00000222629 2 ENSG00000222626 2 ENSG00000251870 2 ENSG00000222581 2 ENSG00000222300 2 ENSG00000252763 2 ENSG00000223078 2 ENSG00000222582 2 ENSG00000222231 2 ENSG00000222355 2 About GeneDecksing
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Genomic Variantsfor RNU2-7P gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor RNU2-7P gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
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Publicationsfor RNU2-7P gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section --
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External Searches for RNU2-7P gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RNU2-7P gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RNU2-7P gene
(According to HUGE )
About This Section --
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Specialized Databases showing RNU2-7P gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for RNU2-7P gene: RNU2-7P GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RNU2-7P gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNU2-7P Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNU2-7P QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU2-7P Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNU2-7P Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU2-7P Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU2-7P
Search Tocris compounds for RNU2-7P
Search ThermoFisher Antibodies for RNU2-7P
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNU2-7P
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