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Aliases for RNU2-6P Gene

Subcategory (RNA class) for RNU2-6P Gene

snRNA

Aliases for RNU2-6P Gene

  • RNA, U2 Small Nuclear 6, Pseudogene 2 3 5

External Ids for RNU2-6P Gene

ORGUL Members for RNU2-6P Gene

Previous GeneCards Identifiers for RNU2-6P Gene

  • GC00U933922
  • GC13M046949

Summaries for RNU2-6P Gene

GeneCards Summary for RNU2-6P Gene

RNU2-6P (RNA, U2 Small Nuclear 6, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-6P Gene

Genomics for RNU2-6P Gene

Regulatory Elements for RNU2-6P Gene

Enhancers for RNU2-6P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G046338 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +34.2 34199 3.9 CTCF MTA2 JUN ZBED1 JUNB EP300 POLR2A EED IKZF1 ETV6 OR7E101P LINC01198 RNU2-6P LCP1 RUBCNL GC13M046284 LOC105370194
GH13G046403 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -30.2 -30151 2.3 CTCF PKNOX1 RFX1 ZNF341 MAX ETV6 MYC SPI1 OR7E101P LCP1 RNU2-6P LINC01198 RUBCNL ZC3H13 GC13P046411 GC13P046380
GH13G046163 1.7 FANTOM5 ENCODE dbSUPER 10.3 +199.8 199794 21.8 HDGF PKNOX1 FOXA2 WRNIP1 SIN3A ZNF2 YY1 ZNF766 ZNF143 FOS LCP1 RNU2-6P RUBCNL LRRC63 TPT1-AS1 ZC3H13 RN7SL288P LOC105370192
GH13G046604 1.5 Ensembl ENCODE dbSUPER 10.1 -232.7 -232671 6.2 PKNOX1 FOXA2 MLX WRNIP1 FEZF1 DMAP1 ZNF48 SLC30A9 ZNF766 ELK1 LRCH1 RNU2-6P RUBCNL GC13P046617 GC13P046577
GH13G046320 1.2 Ensembl ENCODE dbSUPER 10.9 +53.3 53305 1.8 CTCF RAD21 RELA YY1 ZNF366 ZNF143 SMC3 ZNF652 EZH2 ZNF654 RNU2-6P LINC01198 LOC105370194 LINC00563
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU2-6P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU2-6P Gene

Chromosome:
13
Start:
46,374,401 bp from pter
End:
46,374,590 bp from pter
Size:
190 bases
Orientation:
Minus strand

Genomic View for RNU2-6P Gene

Genes around RNU2-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-6P Gene

Proteins for RNU2-6P Gene

Post-translational modifications for RNU2-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-6P Gene

Domains & Families for RNU2-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-6P Gene

Function for RNU2-6P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-6P Gene

Localization for RNU2-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU2-6P Gene

Pathways & Interactions for RNU2-6P Gene

SuperPathways for RNU2-6P Gene

No Data Available

Interacting Proteins for RNU2-6P Gene

Gene Ontology (GO) - Biological Process for RNU2-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-6P Gene

Drugs & Compounds for RNU2-6P Gene

No Compound Related Data Available

Transcripts for RNU2-6P Gene

mRNA/cDNA for RNU2-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-6P Gene

No ASD Table

Relevant External Links for RNU2-6P Gene

GeneLoc Exon Structure for
RNU2-6P
ECgene alternative splicing isoforms for
RNU2-6P

Expression for RNU2-6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-6P Gene

mRNA differential expression in normal tissues according to GTEx for RNU2-6P Gene

This gene is overexpressed in Whole Blood (x16.5) and Small Intestine - Terminal Ileum (x8.3).
genes like me logo Genes that share expression patterns with RNU2-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-6P Gene

Orthologs for RNU2-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU2-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 35
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U2 35 35 35 35 35
  • 92 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U2 35
  • 91 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25360 35
  • 90 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U2 35
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U2 35
  • 81 (a)
OneToMany
Species where no ortholog for RNU2-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-6P Gene

ENSEMBL:
Gene Tree for RNU2-6P (if available)
TreeFam:
Gene Tree for RNU2-6P (if available)

Paralogs for RNU2-6P Gene

No data available for Paralogs for RNU2-6P Gene

Variants for RNU2-6P Gene

Relevant External Links for RNU2-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-6P Gene

Disorders for RNU2-6P Gene

No disorders were found for RNU2-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-6P Gene

Publications for RNU2-6P Gene

No publications were found for RNU2-6P Gene.

Products for RNU2-6P Gene

Sources for RNU2-6P Gene

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