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Aliases for RNU2-5P Gene

Subcategory (RNA class) for RNU2-5P Gene

snRNA

Aliases for RNU2-5P Gene

  • RNA, U2 Small Nuclear 5, Pseudogene 2 3 5
  • RNA, U2 Small Nuclear Pseudogene 3 2 3
  • RNU2P3 3

External Ids for RNU2-5P Gene

ORGUL Members for RNU2-5P Gene

Previous HGNC Symbols for RNU2-5P Gene

  • RNU2P3

Previous GeneCards Identifiers for RNU2-5P Gene

  • GC09M071995
  • GC09M072804

Summaries for RNU2-5P Gene

GeneCards Summary for RNU2-5P Gene

RNU2-5P (RNA, U2 Small Nuclear 5, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-5P Gene

Genomics for RNU2-5P Gene

GeneHancer (GH) Regulatory Elements for RNU2-5P Gene

Promoters and enhancers for RNU2-5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I070190 Enhancer 0.3 FANTOM5 550.8 -1.7 -1687 0.3 GC09M070189 RNU2-5P SMC5 PIR46704 GC09M070097 MAMDC2
GH09I070186 Enhancer 0.2 FANTOM5 550.8 +2.0 1956 0.1 GC09M070189 RNU2-5P MAMDC2 MAMDC2-AS1 GC09M070097
GH09I070176 Enhancer 0.2 dbSUPER 0.4 +11.1 11113 2.3 MAMDC2-AS1 SMC5 RPL24P8 GC09M070189 RNU2-5P GC09M070097 MAMDC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-5P Gene

Genomic Locations for RNU2-5P Gene
chr9:70,188,571-70,188,750
(GRCh38/hg38)
Size:
180 bases
Orientation:
Minus strand
chr9:72,803,487-72,803,666
(GRCh37/hg19)

Genomic View for RNU2-5P Gene

Genes around RNU2-5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-5P Gene

Proteins for RNU2-5P Gene

Post-translational modifications for RNU2-5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-5P Gene

Domains & Families for RNU2-5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-5P Gene

Function for RNU2-5P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-5P Gene

Localization for RNU2-5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-5P Gene

Pathways & Interactions for RNU2-5P Gene

SuperPathways for RNU2-5P Gene

No Data Available

Interacting Proteins for RNU2-5P Gene

Gene Ontology (GO) - Biological Process for RNU2-5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-5P Gene

Drugs & Compounds for RNU2-5P Gene

No Compound Related Data Available

Transcripts for RNU2-5P Gene

mRNA/cDNA for RNU2-5P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-5P Gene

No ASD Table

Relevant External Links for RNU2-5P Gene

GeneLoc Exon Structure for
RNU2-5P
ECgene alternative splicing isoforms for
RNU2-5P

Expression for RNU2-5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-5P Gene

genes like me logo Genes that share expression patterns with RNU2-5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-5P Gene

Orthologs for RNU2-5P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-5P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U2 34
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U2 34
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23628 34
  • 70 (a)
OneToMany
Gm26020 34
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U2 34 34
  • 78 (a)
ManyToMany
Species where no ortholog for RNU2-5P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-5P Gene

ENSEMBL:
Gene Tree for RNU2-5P (if available)
TreeFam:
Gene Tree for RNU2-5P (if available)

Paralogs for RNU2-5P Gene

No data available for Paralogs for RNU2-5P Gene

Variants for RNU2-5P Gene

Additional Variant Information for RNU2-5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-5P Gene

Disorders for RNU2-5P Gene

No disorders were found for RNU2-5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-5P Gene

Publications for RNU2-5P Gene

  1. Abundant pseudogenes for small nuclear RNAs are dispersed in the human genome. (PMID: 6165010) Denison RA … Weiner AM (Proceedings of the National Academy of Sciences of the United States of America 1981) 2 3 58

Products for RNU2-5P Gene

Sources for RNU2-5P Gene

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