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Aliases for RNU2-53P Gene

Subcategory (RNA class) for RNU2-53P Gene

snRNA

Aliases for RNU2-53P Gene

  • RNA, U2 Small Nuclear 53, Pseudogene 2 3 5

External Ids for RNU2-53P Gene

ORGUL Members for RNU2-53P Gene

Previous GeneCards Identifiers for RNU2-53P Gene

  • GC15P053946
  • GC00U935978

Summaries for RNU2-53P Gene

GeneCards Summary for RNU2-53P Gene

RNU2-53P (RNA, U2 Small Nuclear 53, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-53P Gene

Genomics for RNU2-53P Gene

Regulatory Elements for RNU2-53P Gene

Enhancers for RNU2-53P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F053586 0.4 ENCODE 10.7 -65.0 -64988 0.1 CTCF CEBPB CEBPG ZNF644 RAD21 POLR2A SMARCA4 CEBPA SMC3 THAP11 RNU2-53P GC15M056094
GH15F053431 0.2 Ensembl 9.6 -220.5 -220477 0.2 RNU2-53P GC15P053432 GC15M056092
GH15F052804 1.3 FANTOM5 ENCODE 9.6 -848.4 -848364 0.3 RNF2 CBX2 RAD21 NR2F2 YY1 CBX8 ATF3 HNF4G CUX1 ZBTB33 ONECUT1 RNU2-53P LOC105370822 GC15P052795 PIR33850
GH15F052803 1.1 ENCODE 9.6 -847.0 -846976 2.4 CTCF RNF2 CBX2 RAD21 NR2F2 YY1 SMARCA4 POLR2A ATF3 HNF4G RNU2-53P LOC101928499 LOC105370822
GH15F053650 0.3 FANTOM5 0.8 -1.2 -1190 0.3 WDR72 RNU2-53P GC15M056094
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU2-53P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU2-53P Gene

Chromosome:
15
Start:
53,651,977 bp from pter
End:
53,652,123 bp from pter
Size:
147 bases
Orientation:
Plus strand

Genomic View for RNU2-53P Gene

Genes around RNU2-53P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-53P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-53P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-53P Gene

Proteins for RNU2-53P Gene

Post-translational modifications for RNU2-53P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-53P Gene

Domains & Families for RNU2-53P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-53P Gene

Function for RNU2-53P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-53P Gene

Localization for RNU2-53P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU2-53P Gene

Pathways & Interactions for RNU2-53P Gene

SuperPathways for RNU2-53P Gene

No Data Available

Interacting Proteins for RNU2-53P Gene

Gene Ontology (GO) - Biological Process for RNU2-53P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-53P Gene

Transcripts for RNU2-53P Gene

mRNA/cDNA for RNU2-53P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-53P Gene

No ASD Table

Relevant External Links for RNU2-53P Gene

GeneLoc Exon Structure for
RNU2-53P
ECgene alternative splicing isoforms for
RNU2-53P

Expression for RNU2-53P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-53P Gene

genes like me logo Genes that share expression patterns with RNU2-53P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU2-53P Gene

Orthologs for RNU2-53P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-53P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 35
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23788 35
  • 57 (a)
OneToMany
Gm23907 35
  • 42 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U2 35 35
  • 45 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U2 35
  • 43 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U2 35
  • 39 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U2 35
  • 37 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U2 35
  • 36 (a)
OneToOne
Species where no ortholog for RNU2-53P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-53P Gene

ENSEMBL:
Gene Tree for RNU2-53P (if available)
TreeFam:
Gene Tree for RNU2-53P (if available)

Paralogs for RNU2-53P Gene

No data available for Paralogs for RNU2-53P Gene

Variants for RNU2-53P Gene

Relevant External Links for RNU2-53P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-53P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-53P Gene

Disorders for RNU2-53P Gene

No disorders were found for RNU2-53P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-53P Gene

Publications for RNU2-53P Gene

No publications were found for RNU2-53P Gene.

Products for RNU2-53P Gene

Sources for RNU2-53P Gene

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