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Aliases for RNU2-43P Gene

Subcategory (RNA class) for RNU2-43P Gene

snRNA

Aliases for RNU2-43P Gene

  • RNA, U2 Small Nuclear 43, Pseudogene 2 3 5

External Ids for RNU2-43P Gene

ORGUL Members for RNU2-43P Gene

Previous GeneCards Identifiers for RNU2-43P Gene

  • GC10P103069
  • GC00U935643

Summaries for RNU2-43P Gene

GeneCards Summary for RNU2-43P Gene

RNU2-43P (RNA, U2 Small Nuclear 43, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-43P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-43P Gene

Genomics for RNU2-43P Gene

GeneHancer (GH) Regulatory Elements for RNU2-43P Gene

Promoters and enhancers for RNU2-43P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I101485 Enhancer 1.7 VISTA UCNEbase Ensembl ENCODE 10.8 +178.5 178524 1.6 PKNOX1 FOXA2 ARNT FEZF1 ZNF2 YY1 ZNF121 ZNF213 RXRA TSHZ1 GC10P101487 RNU2-43P DPCD TLX1 POLL KCNIP2-AS1 MFSD13A GC10M101454 BTRC
GH10I101506 Enhancer 1.3 VISTA UCNEbase 10.3 +200.0 200025 1.3 PKNOX1 INSM2 FEZF1 ZNF664 ZNF121 ZNF316 ZNF213 ZNF366 GLI2 ZSCAN5C GC10P101507 RNU2-43P GC10P101487 PIR58342 BTRC
GH10I101330 Enhancer 1 UCNEbase FANTOM5 ENCODE 11.8 +23.6 23593 0.4 SOX13 GATAD2A CBFA2T3 BTRC RNU2-43P RNU2-59P POLL DPCD PDZD7 MGEA5 GC10P101339 ENSG00000230967
GH10I101367 Enhancer 0.9 ENCODE 10.6 +60.4 60381 1.5 PKNOX1 INSM2 KLF17 TCF12 ZNF213 EGR1 ZNF366 ZSCAN5C SCRT2 ZNF391 LZTS2 RNU2-43P NOLC1 SLF2 SEC31B POLL GC10M101365 RNU2-59P BTRC GC10P101379
GH10I101466 Enhancer 0.8 UCNEbase 11 +158.9 158930 0.3 PKNOX1 ZIC2 PRDM6 ZFHX2 POLR2A ZSCAN5C EGR2 EZH2 RNU2-43P DPCD GC10M101454 GC10P101452 BTRC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-43P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-43P Gene

Genomic Locations for RNU2-43P Gene
chr10:101,307,529-101,307,718
(GRCh38/hg38)
Size:
190 bases
Orientation:
Plus strand

Genomic View for RNU2-43P Gene

Genes around RNU2-43P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-43P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-43P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-43P Gene

Proteins for RNU2-43P Gene

Post-translational modifications for RNU2-43P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-43P Gene

Domains & Families for RNU2-43P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-43P Gene

Function for RNU2-43P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-43P Gene

Localization for RNU2-43P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-43P Gene

Pathways & Interactions for RNU2-43P Gene

SuperPathways for RNU2-43P Gene

No Data Available

Interacting Proteins for RNU2-43P Gene

Gene Ontology (GO) - Biological Process for RNU2-43P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-43P Gene

Drugs & Compounds for RNU2-43P Gene

No Compound Related Data Available

Transcripts for RNU2-43P Gene

mRNA/cDNA for RNU2-43P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-43P Gene

No ASD Table

Relevant External Links for RNU2-43P Gene

GeneLoc Exon Structure for
RNU2-43P
ECgene alternative splicing isoforms for
RNU2-43P

Expression for RNU2-43P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-43P Gene

genes like me logo Genes that share expression patterns with RNU2-43P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-43P Gene

Orthologs for RNU2-43P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-43P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U2 34
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U2 34
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U2 34 34
  • 80 (a)
ManyToMany
Species where no ortholog for RNU2-43P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-43P Gene

ENSEMBL:
Gene Tree for RNU2-43P (if available)
TreeFam:
Gene Tree for RNU2-43P (if available)

Paralogs for RNU2-43P Gene

No data available for Paralogs for RNU2-43P Gene

Variants for RNU2-43P Gene

Additional Variant Information for RNU2-43P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-43P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-43P Gene

Disorders for RNU2-43P Gene

No disorders were found for RNU2-43P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-43P Gene

Publications for RNU2-43P Gene

No publications were found for RNU2-43P Gene.

Products for RNU2-43P Gene

Sources for RNU2-43P Gene

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