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Aliases for RNU2-38P Gene

Subcategory (RNA class) for RNU2-38P Gene

snRNA

Aliases for RNU2-38P Gene

  • RNA, U2 Small Nuclear 38, Pseudogene 2 3 5

External Ids for RNU2-38P Gene

ORGUL Members for RNU2-38P Gene

Previous GeneCards Identifiers for RNU2-38P Gene

  • GC01P144947
  • GC00U936089

Summaries for RNU2-38P Gene

GeneCards Summary for RNU2-38P Gene

RNU2-38P (RNA, U2 Small Nuclear 38, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU2-38P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

  • U2 spliceosomal RNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenosine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

View fRNAdb secondary structures for RNU2-38P

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU2-38P Gene

Genomics for RNU2-38P Gene

Regulatory Elements for RNU2-38P Gene

Enhancers for RNU2-38P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G148941 1.4 Ensembl ENCODE dbSUPER 0.7 -3.1 -3071 3.6 FOXA2 SIN3A KLF17 YBX1 FEZF1 ZNF366 SCRT2 FOS BCLAF1 GATAD2B NBPF9 RNU2-38P PIR31643
GH01G148946 1.4 Ensembl ENCODE dbSUPER 0.4 -8.0 -8012 2.6 TBP PKNOX1 FOXA2 ATF1 NFRKB YBX1 BMI1 RELB IKZF2 CREM PIR31643 RNU2-38P
GH01G148935 0.6 dbSUPER 0.7 +4.2 4207 0.7 PKNOX1 PBX2 IKZF1 CEBPB NFE2 IKZF2 TBX21 RNU2-38P GC01M148879
GH01G148887 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +47.0 46971 10.5 HDGF PKNOX1 FOXA2 WRNIP1 DMAP1 YY1 ZNF143 FOS DEK REST PDE4DIP HIST2H2BD HIST2H2BC ENSG00000261716 GC01M148879 RNU2-38P
GH01G148915 1.2 Ensembl ENCODE dbSUPER 0.3 +22.5 22516 3.0 ZSCAN4 ZKSCAN1 ZNF507 ARID3A GATA3 ZNF366 SCRT2 PRDM10 RELB MTA2 RNU2-38P GC01M148879
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU2-38P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU2-38P Gene

Chromosome:
1
Start:
148,939,739 bp from pter
End:
148,939,817 bp from pter
Size:
79 bases
Orientation:
Minus strand

Genomic View for RNU2-38P Gene

Genes around RNU2-38P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-38P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-38P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-38P Gene

ORGUL Member Location for RNU2-38P Gene

ORGUL Member Location for RNU2-38P gene

Proteins for RNU2-38P Gene

Post-translational modifications for RNU2-38P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-38P Gene

Domains & Families for RNU2-38P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-38P Gene

Function for RNU2-38P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-38P Gene

Localization for RNU2-38P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU2-38P Gene

Pathways & Interactions for RNU2-38P Gene

SuperPathways for RNU2-38P Gene

No Data Available

Interacting Proteins for RNU2-38P Gene

Gene Ontology (GO) - Biological Process for RNU2-38P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-38P Gene

Drugs & Compounds for RNU2-38P Gene

No Compound Related Data Available

Transcripts for RNU2-38P Gene

fRNAdb Secondary structures for RNU2-38P Gene

  • FR404588

mRNA/cDNA for RNU2-38P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-38P Gene

No ASD Table

Relevant External Links for RNU2-38P Gene

GeneLoc Exon Structure for
RNU2-38P
ECgene alternative splicing isoforms for
RNU2-38P

Expression for RNU2-38P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-38P Gene

genes like me logo Genes that share expression patterns with RNU2-38P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-38P Gene

Orthologs for RNU2-38P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-38P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U2 35
  • 42 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U2 35
  • 39 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U2 35
  • 32 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U2 35
  • 43 (a)
ManyToMany
Species where no ortholog for RNU2-38P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU2-38P Gene

ENSEMBL:
Gene Tree for RNU2-38P (if available)
TreeFam:
Gene Tree for RNU2-38P (if available)

Paralogs for RNU2-38P Gene

No data available for Paralogs for RNU2-38P Gene

Variants for RNU2-38P Gene

Relevant External Links for RNU2-38P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-38P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-38P Gene

Disorders for RNU2-38P Gene

No disorders were found for RNU2-38P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-38P Gene

Publications for RNU2-38P Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund J.A. … Schultz S.C. (RNA 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby M.I. … Greenbaum N.L. (RNA 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for RNU2-38P Gene

Sources for RNU2-38P Gene

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