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Aliases for RNU2-2P Gene

Subcategory (RNA class) for RNU2-2P Gene

snRNA

Aliases for RNU2-2P Gene

  • RNA, U2 Small Nuclear 2, Pseudogene 2 3 5
  • RNA, U2B Small Nuclear 2 3
  • RNA, U2 Small Nuclear 2 2
  • RNU2-2 3
  • RNU2B 3
  • U2 3

External Ids for RNU2-2P Gene

ORGUL Members for RNU2-2P Gene

Previous HGNC Symbols for RNU2-2P Gene

  • RNU2B
  • RNU2-2

Previous GeneCards Identifiers for RNU2-2P Gene

  • GC11M062612

Summaries for RNU2-2P Gene

GeneCards Summary for RNU2-2P Gene

RNU2-2P (RNA, U2 Small Nuclear 2, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-2P Gene

Genomics for RNU2-2P Gene

Regulatory Elements for RNU2-2P Gene

Enhancers for RNU2-2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F062838 0.2 ENCODE 0.8 +1.0 964 4.8 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 METTL12 UBXN1 LRRN4CL NXF1 TAF6L INTS5 IMMP1LP1 SNHG1 TTC9C STX5
GH11F062850 1.1 ENCODE 0.4 -8.8 -8809 0.4 SCRT1 BCOR CTCF ZMYM3 POLR2A TARDBP SCRT2 PRDM10 KDM1A GC11M062902 SNORD22 GC11M062842 RNU2-2P WDR74
GH11F062853 0.4 ENCODE 0.4 -8.4 -8355 0.1 POLR2A GC11M062902 SNORD22 GC11M062842 RNU2-2P WDR74
GH11F062851 0.6 ENCODE 0.4 -10.0 -10049 1.6 PKNOX1 ARNT TBL1XR1 KLF17 NSD2 SIN3A PAF1 SMARCA5 ZNF362 SMAD5 SNHG1 INTS5 NXF1 UBXN1 METTL12 EEF1G IMMP1LP1 TMEM223 TMEM179B GC11M062902
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU2-2P on UCSC Golden Path with GeneCards custom track

Promoters for RNU2-2P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000319434 1309 4201 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3

Genomic Location for RNU2-2P Gene

Chromosome:
11
Start:
62,841,619 bp from pter
End:
62,841,809 bp from pter
Size:
191 bases
Orientation:
Minus strand

Genomic View for RNU2-2P Gene

Genes around RNU2-2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-2P Gene

Proteins for RNU2-2P Gene

Post-translational modifications for RNU2-2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-2P Gene

Domains & Families for RNU2-2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-2P Gene

Function for RNU2-2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-2P Gene

Localization for RNU2-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU2-2P Gene

Pathways & Interactions for RNU2-2P Gene

SuperPathways for RNU2-2P Gene

No Data Available

Interacting Proteins for RNU2-2P Gene

Gene Ontology (GO) - Biological Process for RNU2-2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-2P Gene

Transcripts for RNU2-2P Gene

mRNA/cDNA for RNU2-2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-2P Gene

No ASD Table

Relevant External Links for RNU2-2P Gene

GeneLoc Exon Structure for
RNU2-2P
ECgene alternative splicing isoforms for
RNU2-2P

Expression for RNU2-2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-2P Gene

mRNA differential expression in normal tissues according to GTEx for RNU2-2P Gene

This gene is overexpressed in Whole Blood (x4.1).
genes like me logo Genes that share expression patterns with RNU2-2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU2-2P Gene

Orthologs for RNU2-2P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU2-2P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U2 35
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23444 35
  • 97 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia U2 35
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U2 35
  • 96 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U2 35 35 35 35 35
  • 95 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U2 35
  • 91 (a)
OneToOne
Species where no ortholog for RNU2-2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-2P Gene

ENSEMBL:
Gene Tree for RNU2-2P (if available)
TreeFam:
Gene Tree for RNU2-2P (if available)

Paralogs for RNU2-2P Gene

No data available for Paralogs for RNU2-2P Gene

Variants for RNU2-2P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU2-2P Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Relevant External Links for RNU2-2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU2-2P Gene

Disorders for RNU2-2P Gene

No disorders were found for RNU2-2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-2P Gene

Publications for RNU2-2P Gene

  1. Mg2+ induces a sharp and reversible transition in U1 and U2 small nuclear ribonucleoprotein configurations. (PMID: 6238232) Reveillaud I. … Jeanteur P. (Mol. Cell. Biol. 1984) 2 3 64

Products for RNU2-2P Gene

Sources for RNU2-2P Gene

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