Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU2-2P Gene

Subcategory (RNA class) for RNU2-2P Gene

snRNA

Aliases for RNU2-2P Gene

  • RNA, U2 Small Nuclear 2, Pseudogene 2 3
  • RNA, U2B Small Nuclear 2 3
  • RNA, U2 Small Nuclear 2 2
  • RNU2-2 3
  • RNU2B 3
  • U2 3

External Ids for RNU2-2P Gene

ORGUL Members for RNU2-2P Gene

Previous HGNC Symbols for RNU2-2P Gene

  • RNU2B
  • RNU2-2

Previous GeneCards Identifiers for RNU2-2P Gene

  • GC11M062612

Summaries for RNU2-2P Gene

GeneCards Summary for RNU2-2P Gene

RNU2-2P (RNA, U2 Small Nuclear 2, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class. Among its related pathways are mRNA Splicing - Major Pathway.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-2P Gene

Genomics for RNU2-2P Gene

Genomic Location for RNU2-2P Gene

Start:
62,841,619 bp from pter
End:
62,841,809 bp from pter
Size:
191 bases
Orientation:
Minus strand

Genomic View for RNU2-2P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU2-2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-2P Gene

No data available for Regulatory Elements for RNU2-2P Gene

Proteins for RNU2-2P Gene

Post-translational modifications for RNU2-2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-2P Gene

Domains for RNU2-2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-2P Gene

Function for RNU2-2P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU2-2P Gene

Localization for RNU2-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU2-2P Gene

Pathways for RNU2-2P Gene

SuperPathways for RNU2-2P Gene

Superpath Contained pathways
1 mRNA Splicing - Major Pathway
genes like me logo Genes that share pathways with RNU2-2P: view

Pathways by source for RNU2-2P Gene

1 BioSystems pathway for RNU2-2P Gene

Interacting Proteins for RNU2-2P Gene

Gene Ontology (GO) - Biological Process for RNU2-2P Gene

None

Transcripts for RNU2-2P Gene

mRNA/cDNA for RNU2-2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RNU2-2P

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-2P Gene

No ASD Table

Relevant External Links for RNU2-2P Gene

GeneLoc Exon Structure for
RNU2-2P
ECgene alternative splicing isoforms for
RNU2-2P

Expression for RNU2-2P Gene

mRNA expression in normal human tissues for RNU2-2P Gene

mRNA differential expression in normal tissues according to GTEx for RNU2-2P Gene

This gene is overexpressed in Whole Blood (4.1).
genes like me logo Genes that share expressions with RNU2-2P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for RNU2-2P Gene

Orthologs for RNU2-2P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU2-2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U2 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U2 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23444 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U2 36
  • 96 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U2 36
  • 95 (a)
ManyToMany
U2 36
  • 95 (a)
ManyToMany
U2 36
  • 96 (a)
ManyToMany
U2 36
  • 96 (a)
ManyToMany
U2 36
  • 94 (a)
ManyToMany
Species with no ortholog for RNU2-2P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-2P Gene

ENSEMBL:
Gene Tree for RNU2-2P (if available)
TreeFam:
Gene Tree for RNU2-2P (if available)

Paralogs for RNU2-2P Gene

No data available for Paralogs for RNU2-2P Gene

Variants for RNU2-2P Gene

Sequence variations from dbSNP and Humsavar for RNU2-2P Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs1298588 -- 62,843,454(+) tcccc(A/C)cccca upstream-variant-2KB
rs2510084 -- 62,843,736(-) ttcct(G/T)gcttt upstream-variant-2KB
rs3763854 -- 62,842,716(-) CTCTC(C/T)TCCTC upstream-variant-2KB
rs73487834 -- 62,843,549(+) ACGGC(A/G)AGATT upstream-variant-2KB
rs79889018 -- 62,843,335(+) GGAGG(C/G)AGAGG upstream-variant-2KB

Relevant External Links for RNU2-2P Gene

HapMap Linkage Disequilibrium report
RNU2-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNU2-2P Gene

Disorders for RNU2-2P Gene

No disorders were found for RNU2-2P Gene.

No data available for UniProtKB/Swiss-Prot for RNU2-2P Gene

Publications for RNU2-2P Gene

  1. Mg2+ induces a sharp and reversible transition in U1 and U2 small nuclear ribonucleoprotein configurations. (PMID: 6238232) Reveillaud I. … Jeanteur P. (Mol. Cell. Biol. 1984) 2 3

Products for RNU2-2P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNU2-2P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNU2-2P
    • Block miRNA regulation of RNU2-2P using miScript Target Protectors

    Sources for RNU2-2P Gene

    Back to Top

    Content