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Aliases for RNU11-5P Gene

Subcategory (RNA class) for RNU11-5P Gene

snRNA

Aliases for RNU11-5P Gene

  • RNA, U11 Small Nuclear 5, Pseudogene 2 3 5

External Ids for RNU11-5P Gene

ORGUL Members for RNU11-5P Gene

Previous GeneCards Identifiers for RNU11-5P Gene

  • GC14P029948

Summaries for RNU11-5P Gene

GeneCards Summary for RNU11-5P Gene

RNU11-5P (RNA, U11 Small Nuclear 5, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU11-5P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U11_snRNA: U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence.

  • U11 spliceosomal RNA: The U11 small nuclear (snRNA), together with U4atac/U6atac, U5, and U12 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns.

Additional gene information for RNU11-5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU11-5P Gene

Genomics for RNU11-5P Gene

GeneHancer (GH) Regulatory Elements for RNU11-5P Gene

Promoters and enhancers for RNU11-5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I029527 Enhancer 0.9 VISTA UCNEbase 11.2 +52.0 52041 1.7 CTCF POLR2A RAD21 SPI1 RNU11-5P LINC02282 GC14P029579
GH14I029442 Enhancer 0.3 VISTA 11 -34.1 -34073 1.2 JUN RNU11-5P LOC105370428
GH14I029458 Enhancer 1.1 VISTA UCNEbase 0.4 -17.8 -17839 1.3 GATA3 FOXA2 CREB1 FOS CUX1 FOXA1 RNU11-5P LOC105370428
GH14I029388 Enhancer 1.5 VISTA UCNEbase Ensembl ENCODE 0.2 -85.9 -85851 4.4 MXI1 POLR2A ATF7 ATF2 EZH2 LOC105370428 RNU11-5P
GH14I029464 Enhancer 0.5 UCNEbase 0.4 -12.5 -12495 0.2 CTCF RNU11-5P LOC105370428
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU11-5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU11-5P Gene

Genomic Locations for RNU11-5P Gene
chr14:29,476,784-29,476,912
(GRCh38/hg38)
Size:
129 bases
Orientation:
Plus strand
chr14:29,945,990-29,946,118
(GRCh37/hg19)

Genomic View for RNU11-5P Gene

Genes around RNU11-5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU11-5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU11-5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU11-5P Gene

ORGUL Member Location for RNU11-5P Gene

ORGUL Member Location for RNU11-5P gene

Proteins for RNU11-5P Gene

Post-translational modifications for RNU11-5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU11-5P Gene

Domains & Families for RNU11-5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU11-5P Gene

Function for RNU11-5P Gene

Phenotypes From GWAS Catalog for RNU11-5P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU11-5P Gene

Localization for RNU11-5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU11-5P Gene

Pathways & Interactions for RNU11-5P Gene

SuperPathways for RNU11-5P Gene

No Data Available

Interacting Proteins for RNU11-5P Gene

Gene Ontology (GO) - Biological Process for RNU11-5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU11-5P Gene

Drugs & Compounds for RNU11-5P Gene

No Compound Related Data Available

Expression for RNU11-5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU11-5P Gene

genes like me logo Genes that share expression patterns with RNU11-5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU11-5P Gene

Orthologs for RNU11-5P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU11-5P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U11 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22472 34
  • 73 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U11 34
  • 70 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U11 34
  • 50 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U11 34
  • 53 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U11 34
  • 41 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U11 34
  • 46 (a)
OneToMany
Species where no ortholog for RNU11-5P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU11-5P Gene

ENSEMBL:
Gene Tree for RNU11-5P (if available)
TreeFam:
Gene Tree for RNU11-5P (if available)

Paralogs for RNU11-5P Gene

No data available for Paralogs for RNU11-5P Gene

Variants for RNU11-5P Gene

Additional Variant Information for RNU11-5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU11-5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU11-5P Gene

Disorders for RNU11-5P Gene

No disorders were found for RNU11-5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU11-5P Gene

Publications for RNU11-5P Gene

  1. Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila. (PMID: 15210936) Schneider C … Lührmann R (Proceedings of the National Academy of Sciences of the United States of America 2004) 1
  2. Additional low-abundance human small nuclear ribonucleoproteins: U11, U12, etc. (PMID: 2973606) Montzka KA … Steitz JA (Proceedings of the National Academy of Sciences of the United States of America 1988) 1

Products for RNU11-5P Gene

Sources for RNU11-5P Gene

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