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Aliases for RNU11-5P Gene

Subcategory (RNA class) for RNU11-5P Gene


Aliases for RNU11-5P Gene

  • RNA, U11 Small Nuclear 5, Pseudogene 2 3 5

External Ids for RNU11-5P Gene

ORGUL Members for RNU11-5P Gene

Previous GeneCards Identifiers for RNU11-5P Gene

  • GC14P029948

Summaries for RNU11-5P Gene

GeneCards Summary for RNU11-5P Gene

RNU11-5P (RNA, U11 Small Nuclear 5, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU11-5P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U11_snRNA: U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence.

  • U11 spliceosomal RNA: The U11 small nuclear (snRNA), together with U4atac/U6atac, U5, and U12 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns.

Additional gene information for RNU11-5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU11-5P Gene

Genomics for RNU11-5P Gene

Regulatory Elements for RNU11-5P Gene

Enhancers for RNU11-5P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H029527 1.5 VISTA 11.2 +52.0 52042 1.7 CTCF POLR2A RAD21 SPI1 RNU11-5P LINC02282 GC14P029579
GH14H029442 0.4 VISTA 11 -34.1 -34073 1.2 JUN RNU11-5P LOC105370428
GH14H029458 1.8 VISTA 0.4 -17.8 -17839 1.3 GATA3 FOXA2 FOS CUX1 FOXA1 RNU11-5P LOC105370428
GH14H029388 2.3 VISTA Ensembl ENCODE 0.2 -85.9 -85851 4.4 MXI1 POLR2A ATF7 ATF2 EZH2 LOC105370428 RNU11-5P
GH14H029491 0.2 VISTA 0.4 +15.3 15259 1.5 RNU11-5P GC14P029579
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU11-5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU11-5P Gene

Genomic Locations for RNU11-5P Gene
129 bases
Plus strand

Genomic View for RNU11-5P Gene

Genes around RNU11-5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU11-5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU11-5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU11-5P Gene

ORGUL Member Location for RNU11-5P Gene

ORGUL Member Location for RNU11-5P gene

Proteins for RNU11-5P Gene

Post-translational modifications for RNU11-5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU11-5P Gene

Domains & Families for RNU11-5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU11-5P Gene

Function for RNU11-5P Gene

Phenotypes From GWAS Catalog for RNU11-5P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU11-5P Gene

Localization for RNU11-5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU11-5P Gene

Pathways & Interactions for RNU11-5P Gene

SuperPathways for RNU11-5P Gene

No Data Available

Interacting Proteins for RNU11-5P Gene

Gene Ontology (GO) - Biological Process for RNU11-5P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU11-5P Gene

Drugs & Compounds for RNU11-5P Gene

No Compound Related Data Available

Transcripts for RNU11-5P Gene

mRNA/cDNA for RNU11-5P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU11-5P Gene

No ASD Table

Relevant External Links for RNU11-5P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU11-5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU11-5P Gene

genes like me logo Genes that share expression patterns with RNU11-5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU11-5P Gene

Orthologs for RNU11-5P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU11-5P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U11 34
  • 100 (a)
(Mus musculus)
Mammalia Gm22472 34
  • 73 (a)
(Bos Taurus)
Mammalia U11 34
  • 70 (a)
(Ornithorhynchus anatinus)
Mammalia U11 34
  • 50 (a)
(Anolis carolinensis)
Reptilia U11 34
  • 53 (a)
(Danio rerio)
Actinopterygii U11 34
  • 41 (a)
sea squirt
(Ciona savignyi)
Ascidiacea U11 34
  • 46 (a)
Species where no ortholog for RNU11-5P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU11-5P Gene

Gene Tree for RNU11-5P (if available)
Gene Tree for RNU11-5P (if available)

Paralogs for RNU11-5P Gene

No data available for Paralogs for RNU11-5P Gene

Variants for RNU11-5P Gene

Relevant External Links for RNU11-5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU11-5P Gene

Disorders for RNU11-5P Gene

No disorders were found for RNU11-5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU11-5P Gene

Publications for RNU11-5P Gene

  1. Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila. (PMID: 15210936) Schneider C … Lührmann R (Proceedings of the National Academy of Sciences of the United States of America 2004) 1
  2. Additional low-abundance human small nuclear ribonucleoproteins: U11, U12, etc. (PMID: 2973606) Montzka KA … Steitz JA (Proceedings of the National Academy of Sciences of the United States of America 1988) 1

Products for RNU11-5P Gene

Sources for RNU11-5P Gene

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