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Aliases for RNU11-3P Gene

Subcategory (RNA class) for RNU11-3P Gene

snRNA

Aliases for RNU11-3P Gene

  • RNA, U11 Small Nuclear 3, Pseudogene 2 3 5

External Ids for RNU11-3P Gene

ORGUL Members for RNU11-3P Gene

Previous GeneCards Identifiers for RNU11-3P Gene

  • GC10M105073

Summaries for RNU11-3P Gene

GeneCards Summary for RNU11-3P Gene

RNU11-3P (RNA, U11 Small Nuclear 3, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU11-3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU11-3P Gene

Genomics for RNU11-3P Gene

GeneHancer (GH) Regulatory Elements for RNU11-3P Gene

Promoters and enhancers for RNU11-3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I103349 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.7 -38.3 -38331 1.9 HDGF ZNF133 SIN3A DMAP1 GLI4 ZNF2 ZNF48 ETS1 GLIS2 ZNF213 PCGF6 PDCD11 ENSG00000260461 SLK MIR1307 ATP5MD RNU11-3P NEURL1-AS1 CALHM2 GC10M103313
GH10I102743 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 8.9 +568.2 568159 2.6 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A ZNF2 ZBTB7B YY1 POLR2B WBP1L GC10P102744 GC10P102745 PDCD11 SFXN2 AS3MT PCGF6 TAF5 PPRC1 NOLC1
GH10I103237 Enhancer 1.5 FANTOM5 Ensembl ENCODE 10.5 +72.2 72200 5 PKNOX1 CLOCK ARID4B NEUROD1 SIN3A BRCA1 ZNF48 ZNF121 ZNF143 ATF7 BORCS7 NT5C2 AS3MT INA CNNM2 PFN1P11 PTGES3P4 CYP17A1 RNU11-3P ARL3
GH10I103151 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.1 +158.4 158404 4.4 ELF3 FOXA2 ARID4B DMAP1 RARA ZEB1 ZNF335 SCRT2 RCOR1 CREM AS3MT NT5C2 MARCKSL1P1 RNU11-3P PIR33793
GH10I102659 Enhancer 1.3 Ensembl ENCODE dbSUPER 9.4 +651.5 651524 2.3 HDGF MLX ARID4B ZNF48 ETS1 TCF12 ZNF121 GLIS2 ZNF213 ZNF207 SFXN2 ARL3 RNU11-3P MFSD13A LOC105378460 GC10M102382 GC10M102383
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU11-3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU11-3P Gene

Genomic Locations for RNU11-3P Gene
chr10:103,312,436-103,312,568
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand
chr10:105,072,193-105,072,325
(GRCh37/hg19)

Genomic View for RNU11-3P Gene

Genes around RNU11-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU11-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU11-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU11-3P Gene

Proteins for RNU11-3P Gene

Post-translational modifications for RNU11-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU11-3P Gene

Domains & Families for RNU11-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU11-3P Gene

Function for RNU11-3P Gene

Phenotypes From GWAS Catalog for RNU11-3P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU11-3P Gene

Localization for RNU11-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU11-3P Gene

Pathways & Interactions for RNU11-3P Gene

SuperPathways for RNU11-3P Gene

No Data Available

Interacting Proteins for RNU11-3P Gene

Gene Ontology (GO) - Biological Process for RNU11-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU11-3P Gene

Drugs & Compounds for RNU11-3P Gene

No Compound Related Data Available

Transcripts for RNU11-3P Gene

mRNA/cDNA for RNU11-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU11-3P Gene

No ASD Table

Relevant External Links for RNU11-3P Gene

GeneLoc Exon Structure for
RNU11-3P
ECgene alternative splicing isoforms for
RNU11-3P

Expression for RNU11-3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU11-3P Gene

genes like me logo Genes that share expression patterns with RNU11-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU11-3P Gene

Orthologs for RNU11-3P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU11-3P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U11 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U11 34
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24890 34
  • 83 (a)
OneToMany
Gm25785 34
  • 78 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U11 34
  • 67 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U11 34
  • 62 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U11 34
  • 68 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U11 34
  • 58 (a)
OneToMany
Species where no ortholog for RNU11-3P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU11-3P Gene

ENSEMBL:
Gene Tree for RNU11-3P (if available)
TreeFam:
Gene Tree for RNU11-3P (if available)

Paralogs for RNU11-3P Gene

No data available for Paralogs for RNU11-3P Gene

Variants for RNU11-3P Gene

Additional Variant Information for RNU11-3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU11-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU11-3P Gene

Disorders for RNU11-3P Gene

No disorders were found for RNU11-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU11-3P Gene

Publications for RNU11-3P Gene

No publications were found for RNU11-3P Gene.

Products for RNU11-3P Gene

Sources for RNU11-3P Gene

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