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Aliases for RNU105C Gene

Subcategory (RNA class) for RNU105C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for RNU105C Gene

  • RNA, U105C Small Nucleolar 2 3
  • E1-5 3
  • E1-6 3

External Ids for RNU105C Gene

ORGUL Members for RNU105C Gene

Summaries for RNU105C Gene

GeneCards Summary for RNU105C Gene

RNU105C (RNA, U105C Small Nucleolar) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU105C Gene

Genomics for RNU105C Gene

Genomic Location for RNU105C Gene

Start:
54,330,686 bp from pter
End:
54,330,895 bp from pter
Size:
210 bases
Orientation:
Plus strand

Genomic View for RNU105C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU105C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU105C Gene

Regulatory Elements for RNU105C Gene

Proteins for RNU105C Gene

Post-translational modifications for RNU105C Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU105C Gene

Domains for RNU105C Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNU105C Gene

Function for RNU105C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU105C Gene

Localization for RNU105C Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU105C Gene

Pathways for RNU105C Gene

SuperPathways for RNU105C Gene

No Data Available

Interacting Proteins for RNU105C Gene

Gene Ontology (GO) - Biological Process for RNU105C Gene

None

No data available for Pathways by source for RNU105C Gene

Transcripts for RNU105C Gene

mRNA/cDNA for RNU105C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU105C Gene

No ASD Table

Relevant External Links for RNU105C Gene

GeneLoc Exon Structure for
RNU105C
ECgene alternative splicing isoforms for
RNU105C

Expression for RNU105C Gene

mRNA expression in normal human tissues for RNU105C Gene

genes like me logo Genes that share expressions with RNU105C: view

Orthologs for RNU105C Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU105C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA73 37
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24346 37
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA73 37
  • 74 (a)
ManyToMany
SNORA73 37
  • 75 (a)
ManyToMany
SNORA73 37
  • 76 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA73 37
  • 70 (a)
ManyToMany
SNORA73 37
  • 72 (a)
ManyToMany
SNORA73 37
  • 70 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA73 37
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA73 37
  • 68 (a)
ManyToMany
SNORA73 37
  • 67 (a)
ManyToMany
Species with no ortholog for RNU105C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU105C Gene

ENSEMBL:
Gene Tree for RNU105C (if available)
TreeFam:
Gene Tree for RNU105C (if available)

Paralogs for RNU105C Gene

No data available for Paralogs for RNU105C Gene

Variants for RNU105C Gene

Sequence variations from dbSNP and Humsavar for RNU105C Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2656227 -- 54,330,015(-) TCTGT(A/G)TCCTC upstream-variant-2KB
rs2656228 -- 54,329,104(-) ATAGT(C/T)CAGAT upstream-variant-2KB
rs2719351 -- 54,328,944(+) ACAAA(C/T)GGCCA upstream-variant-2KB
rs2719352 -- 54,329,170(+) ccacc(C/T)tccat upstream-variant-2KB
rs2719353 -- 54,331,377(+) GGCAT(C/T)GCACA downstream-variant-500B

Relevant External Links for RNU105C Gene

HapMap Linkage Disequilibrium report
RNU105C

No data available for Structural Variations from Database of Genomic Variants (DGV) for RNU105C Gene

Disorders for RNU105C Gene

Relevant External Links for RNU105C

Genetic Association Database (GAD)
RNU105C
genes like me logo Genes that share disorders with RNU105C: view

No data available for UniProtKB/Swiss-Prot for RNU105C Gene

Publications for RNU105C Gene

  1. Intron-encoded small nucleolar RNAs: new RNA sequence variants and genomic loci. (PMID: 7530998) Selvamurugan N. … Eliceiri G.L. (Biochim. Biophys. Acta 1995) 3
  2. Susceptibility loci for intracranial aneurysm in European and Japanese populations. (PMID: 18997786) Bilguvar K. … GA1nel M. (Nat. Genet. 2008) 49
  3. Genome-wide association study of intracranial aneurysm identifies three new risk loci. (PMID: 20364137) Yasuno K. … GA1nel M. (Nat. Genet. 2010) 49

Products for RNU105C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNU105C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNU105C
    • Block miRNA regulation of RNU105C using miScript Target Protectors

    Sources for RNU105C Gene

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