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Aliases for RNU105C Gene

Subcategory (RNA class) for RNU105C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for RNU105C Gene

  • RNA, U105C Small Nucleolar 2 3 5
  • E1-5 3
  • E1-6 3

External Ids for RNU105C Gene

ORGUL Members for RNU105C Gene

Previous GeneCards Identifiers for RNU105C Gene

  • GC00U990616
  • GC08U900827
  • GC08P055407
  • GC08P055243
  • GC08P050710

Summaries for RNU105C Gene

GeneCards Summary for RNU105C Gene

RNU105C (RNA, U105C Small Nucleolar) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU105C Gene

Genomics for RNU105C Gene

Regulatory Elements for RNU105C Gene

Enhancers for RNU105C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F054335 0.8 ENCODE 0.4 +5.9 5933 1.7 TAL1 JUN POLR2A NCOR1 GATA2 NFE2 NR2F6 MTA2 RNF2 NR2F1 RP1 RNU105C GC08P054349
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU105C on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU105C Gene

Chromosome:
8
Start:
54,330,686 bp from pter
End:
54,330,895 bp from pter
Size:
210 bases
Orientation:
Plus strand

Genomic View for RNU105C Gene

Genes around RNU105C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU105C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU105C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU105C Gene

Proteins for RNU105C Gene

Post-translational modifications for RNU105C Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU105C Gene

Domains & Families for RNU105C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU105C Gene

Function for RNU105C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU105C Gene

Localization for RNU105C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNU105C Gene COMPARTMENTS Subcellular localization image for RNU105C gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RNU105C Gene

Pathways & Interactions for RNU105C Gene

SuperPathways for RNU105C Gene

No Data Available

Interacting Proteins for RNU105C Gene

Gene Ontology (GO) - Biological Process for RNU105C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU105C Gene

Transcripts for RNU105C Gene

mRNA/cDNA for RNU105C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU105C Gene

No ASD Table

Relevant External Links for RNU105C Gene

GeneLoc Exon Structure for
RNU105C
ECgene alternative splicing isoforms for
RNU105C

Expression for RNU105C Gene

mRNA expression in normal human tissues for RNU105C Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU105C Gene:

RNU105C
genes like me logo Genes that share expression patterns with RNU105C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU105C Gene

Orthologs for RNU105C Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU105C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA73 35
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA73 35 35 35
  • 74 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA73 35 35 35
  • 70 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24346 35
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA73 35
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA73 35 35
  • 68 (a)
ManyToMany
Species where no ortholog for RNU105C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU105C Gene

ENSEMBL:
Gene Tree for RNU105C (if available)
TreeFam:
Gene Tree for RNU105C (if available)

Paralogs for RNU105C Gene

No data available for Paralogs for RNU105C Gene

Variants for RNU105C Gene

Sequence variations from dbSNP and Humsavar for RNU105C Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10958401 -- 54,329,151(+) ACATT(A/G)TGTGC upstream-variant-2KB
rs112227658 -- 54,329,358(+) TGATT(C/T)CGCTC upstream-variant-2KB
rs114279947 -- 54,330,588(+) ATCCA(C/G)TTTGG upstream-variant-2KB
rs114391604 -- 54,328,924(+) TCTGA(C/T)GGTGA upstream-variant-2KB
rs115912282 -- 54,331,099(+) TACCC(A/G)GAGCA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RNU105C Gene

Variant ID Type Subtype PubMed ID
dgv2081e212 CNV loss 25503493
esv3572769 CNV loss 25503493

Relevant External Links for RNU105C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU105C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU105C Gene

Disorders for RNU105C Gene

Relevant External Links for RNU105C

Genetic Association Database (GAD)
RNU105C

No disorders were found for RNU105C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU105C Gene

Publications for RNU105C Gene

  1. Genome-wide association study of intracranial aneurysm identifies three new risk loci. (PMID: 20364137) Yasuno K. … GA1nel M. (Nat. Genet. 2010) 46 64
  2. Susceptibility loci for intracranial aneurysm in European and Japanese populations. (PMID: 18997786) Bilguvar K. … GA1nel M. (Nat. Genet. 2008) 46 64
  3. Intron-encoded small nucleolar RNAs: new RNA sequence variants and genomic loci. (PMID: 7530998) Selvamurugan N. … Eliceiri G.L. (Biochim. Biophys. Acta 1995) 3 64

Products for RNU105C Gene

Sources for RNU105C Gene

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