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Aliases for RNU105C Gene

Subcategory (RNA class) for RNU105C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for RNU105C Gene

  • RNA, U105C Small Nucleolar 2 3 5
  • E1-5 3
  • E1-6 3

External Ids for RNU105C Gene

ORGUL Members for RNU105C Gene

Previous GeneCards Identifiers for RNU105C Gene

  • GC00U990616
  • GC08U900827
  • GC08P055407
  • GC08P055243
  • GC08P050710

Summaries for RNU105C Gene

GeneCards Summary for RNU105C Gene

RNU105C (RNA, U105C Small Nucleolar) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with RNU105C include Colonic Benign Neoplasm.

Additional gene information for RNU105C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU105C Gene

Genomics for RNU105C Gene

GeneHancer (GH) Regulatory Elements for RNU105C Gene

Promoters and enhancers for RNU105C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I054335 Enhancer 0.9 ENCODE dbSUPER 0.4 +5.9 5932 1.7 JUN TEAD4 TAL1 FOSL1 TCF12 NCOR1 POLR2A FOXK2 CBFA2T2 NFE2 RP1 RNU105C GC08P054349
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU105C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RNU105C gene promoter:

Genomic Locations for RNU105C Gene

Genomic Locations for RNU105C Gene
chr8:54,330,686-54,330,895
(GRCh38/hg38)
Size:
210 bases
Orientation:
Plus strand
chr8:55,243,246-55,243,455
(GRCh37/hg19)

Genomic View for RNU105C Gene

Genes around RNU105C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU105C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU105C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU105C Gene

Proteins for RNU105C Gene

Post-translational modifications for RNU105C Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU105C Gene

Domains & Families for RNU105C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU105C Gene

Function for RNU105C Gene

Phenotypes From GWAS Catalog for RNU105C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU105C Gene

Localization for RNU105C Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RNU105C gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU105C Gene

Pathways & Interactions for RNU105C Gene

SuperPathways for RNU105C Gene

No Data Available

Interacting Proteins for RNU105C Gene

Gene Ontology (GO) - Biological Process for RNU105C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU105C Gene

Drugs & Compounds for RNU105C Gene

No Compound Related Data Available

Transcripts for RNU105C Gene

mRNA/cDNA for RNU105C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU105C Gene

No ASD Table

Relevant External Links for RNU105C Gene

GeneLoc Exon Structure for
RNU105C
ECgene alternative splicing isoforms for
RNU105C

Expression for RNU105C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU105C Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU105C Gene:

RNU105C
genes like me logo Genes that share expression patterns with RNU105C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU105C Gene

Orthologs for RNU105C Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU105C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA73 34
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA73 34 34 34
  • 74 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA73 34 34 34
  • 70 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24346 34
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA73 34
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA73 34 34
  • 68 (a)
ManyToMany
Species where no ortholog for RNU105C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU105C Gene

ENSEMBL:
Gene Tree for RNU105C (if available)
TreeFam:
Gene Tree for RNU105C (if available)

Paralogs for RNU105C Gene

No data available for Paralogs for RNU105C Gene

Variants for RNU105C Gene

Sequence variations from dbSNP and Humsavar for RNU105C Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1002325664 -- 54,328,769(+) G/T upstream_transcript_variant
rs1002335439 -- 54,329,003(+) T/C upstream_transcript_variant
rs1003330425 -- 54,330,156(+) C/T upstream_transcript_variant
rs1003330778 -- 54,330,960(+) A/G downstream_transcript_variant
rs1004340829 -- 54,329,302(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNU105C Gene

Variant ID Type Subtype PubMed ID
dgv2081e212 CNV loss 25503493
esv3572769 CNV loss 25503493

Additional Variant Information for RNU105C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU105C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU105C Gene

Disorders for RNU105C Gene

MalaCards: The human disease database

(1) MalaCards diseases for RNU105C Gene - From: DISEASES

Disorder Aliases PubMed IDs
colonic benign neoplasm
  • colon neoplasm
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for RNU105C

genes like me logo Genes that share disorders with RNU105C: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RNU105C Gene

Publications for RNU105C Gene

  1. Genome-wide association study of intracranial aneurysm identifies three new risk loci. (PMID: 20364137) Yasuno K … Günel M (Nature genetics 2010) 44 58
  2. Susceptibility loci for intracranial aneurysm in European and Japanese populations. (PMID: 18997786) Bilguvar K … Günel M (Nature genetics 2008) 44 58
  3. Intron-encoded small nucleolar RNAs: new RNA sequence variants and genomic loci. (PMID: 7530998) Selvamurugan N … Eliceiri GL (Biochimica et biophysica acta 1995) 3 58

Products for RNU105C Gene

Sources for RNU105C Gene

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