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Aliases for RNU1-83P Gene

Subcategory (RNA class) for RNU1-83P Gene

snRNA

Aliases for RNU1-83P Gene

  • RNA, U1 Small Nuclear 83, Pseudogene 2 3 5

External Ids for RNU1-83P Gene

ORGUL Members for RNU1-83P Gene

Previous GeneCards Identifiers for RNU1-83P Gene

  • GC12M063246
  • GC00U934796

Summaries for RNU1-83P Gene

GeneCards Summary for RNU1-83P Gene

RNU1-83P (RNA, U1 Small Nuclear 83, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-83P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-83P Gene

Genomics for RNU1-83P Gene

GeneHancer (GH) Regulatory Elements for RNU1-83P Gene

Promoters and enhancers for RNU1-83P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I062817 Enhancer 1.3 FANTOM5 Ensembl ENCODE 21.9 +32.8 32816 1.2 FEZF1 ZNF2 ZNF121 ATF7 ZNF202 REST TSHZ1 ZNF488 ZNF518A ZNF610 RNU1-83P MON2 ENSG00000257354 ENSG00000257568 PPM1H LOC105369795 GC12M062761
GH12I062900 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12 -50.4 -50354 1.3 ELF3 FOXA2 MLX ARID4B NEUROD1 DNMT3B THRB RARA ETS1 CREM PPM1H ENSG00000252660 RNU1-83P GC12M062851
GH12I062898 Enhancer 1.1 Ensembl ENCODE dbSUPER 12 -48.5 -48474 1.8 SMARCE1 ELF3 GATAD2A FOXA2 RFX1 CEBPB DPF2 CEBPG ZNF644 RFX5 RNU1-83P PPM1H GC12M062851
GH12I062910 Enhancer 1.2 FANTOM5 ENCODE 11 -60.3 -60267 1.1 PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 CBX5 GATA2 E2F8 PPM1H ENSG00000252660 RNU1-83P GC12M062851
GH12I062892 Enhancer 1 ENCODE dbSUPER 11.1 -41.2 -41195 0.2 ELF3 FOXA2 RARA TCF12 ATF7 CREM MIXL1 HMG20B CEBPB ZHX2 ENSG00000252660 PPM1H RNU1-83P GC12M062851 LOC105369795
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU1-83P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-83P Gene

Genomic Locations for RNU1-83P Gene
chr12:62,850,738-62,850,901
(GRCh38/hg38)
Size:
164 bases
Orientation:
Minus strand

Genomic View for RNU1-83P Gene

Genes around RNU1-83P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-83P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-83P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-83P Gene

Proteins for RNU1-83P Gene

Post-translational modifications for RNU1-83P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-83P Gene

Domains & Families for RNU1-83P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-83P Gene

Function for RNU1-83P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-83P Gene

Localization for RNU1-83P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-83P Gene

Pathways & Interactions for RNU1-83P Gene

SuperPathways for RNU1-83P Gene

No Data Available

Interacting Proteins for RNU1-83P Gene

Gene Ontology (GO) - Biological Process for RNU1-83P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-83P Gene

Drugs & Compounds for RNU1-83P Gene

No Compound Related Data Available

Transcripts for RNU1-83P Gene

mRNA/cDNA for RNU1-83P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-83P Gene

No ASD Table

Relevant External Links for RNU1-83P Gene

GeneLoc Exon Structure for
RNU1-83P
ECgene alternative splicing isoforms for
RNU1-83P

Expression for RNU1-83P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-83P Gene

genes like me logo Genes that share expression patterns with RNU1-83P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-83P Gene

Orthologs for RNU1-83P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU1-83P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 99 (a)
OneToOne
Species where no ortholog for RNU1-83P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-83P Gene

ENSEMBL:
Gene Tree for RNU1-83P (if available)
TreeFam:
Gene Tree for RNU1-83P (if available)

Paralogs for RNU1-83P Gene

No data available for Paralogs for RNU1-83P Gene

Variants for RNU1-83P Gene

Additional Variant Information for RNU1-83P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-83P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-83P Gene

Disorders for RNU1-83P Gene

No disorders were found for RNU1-83P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-83P Gene

Publications for RNU1-83P Gene

No publications were found for RNU1-83P Gene.

Products for RNU1-83P Gene

Sources for RNU1-83P Gene

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