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Aliases for RNU1-80P Gene

Subcategory (RNA class) for RNU1-80P Gene

snRNA

Aliases for RNU1-80P Gene

  • RNA, U1 Small Nuclear 80, Pseudogene 2 3 5

External Ids for RNU1-80P Gene

ORGUL Members for RNU1-80P Gene

Previous GeneCards Identifiers for RNU1-80P Gene

  • GC17P075919
  • GC00U934843

Summaries for RNU1-80P Gene

GeneCards Summary for RNU1-80P Gene

RNU1-80P (RNA, U1 Small Nuclear 80, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-80P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-80P Gene

Genomics for RNU1-80P Gene

GeneHancer (GH) Regulatory Elements for RNU1-80P Gene

Promoters and enhancers for RNU1-80P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I078039 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 9.8 +120.7 120697 3.4 SMAD1 NFIB SIN3A YBX1 RFX5 YY1 ZNF366 ZNF207 ZNF143 RCOR1 TNRC6C RNU6-625P TMEM235 RNU1-80P UBE2V2P2 ENSG00000279600
GH17I077869 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -50.4 -50388 1.4 CTCF PKNOX1 BACH1 CEBPG EBF1 IRF4 ZNF143 ATF7 BCLAF1 IKZF2 RNU1-80P SOCS3 LINC01973 LOC105371908
GH17I077863 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -55.5 -55470 2.6 BCOR KLF1 ETV1 ZSCAN4 MAX ZMYM3 NFXL1 ZNF664 ZFHX2 ZNF766 RNU1-80P RNU6-625P LINC01973 LOC105371908
GH17I077875 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.5 -44.2 -44188 0.7 HDAC1 PKNOX1 ATF1 TAF9B RB1 NFRKB TCF12 ZNF766 FOS ATF7 RNU1-80P SOCS3 TMC6 LINC01973 LOC105371908
GH17I077801 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 11 -117.1 -117104 2 MXI1 ZSCAN4 SIN3A PAX8 ZFHX2 POLR2A NFATC1 RCOR1 CHD2 EGR2 TNRC6C LINC01973 RNU1-80P TMEM235 GC17P077792 GC17P077836 LOC105371908
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU1-80P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-80P Gene

Genomic Locations for RNU1-80P Gene
chr17:77,920,098-77,920,258
(GRCh38/hg38)
Size:
161 bases
Orientation:
Plus strand

Genomic View for RNU1-80P Gene

Genes around RNU1-80P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-80P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-80P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-80P Gene

Proteins for RNU1-80P Gene

Post-translational modifications for RNU1-80P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-80P Gene

Domains & Families for RNU1-80P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-80P Gene

Function for RNU1-80P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-80P Gene

Localization for RNU1-80P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-80P Gene

Pathways & Interactions for RNU1-80P Gene

SuperPathways for RNU1-80P Gene

No Data Available

Interacting Proteins for RNU1-80P Gene

Gene Ontology (GO) - Biological Process for RNU1-80P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-80P Gene

Drugs & Compounds for RNU1-80P Gene

No Compound Related Data Available

Transcripts for RNU1-80P Gene

mRNA/cDNA for RNU1-80P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-80P Gene

No ASD Table

Relevant External Links for RNU1-80P Gene

GeneLoc Exon Structure for
RNU1-80P
ECgene alternative splicing isoforms for
RNU1-80P

Expression for RNU1-80P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-80P Gene

genes like me logo Genes that share expression patterns with RNU1-80P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-80P Gene

Orthologs for RNU1-80P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-80P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24621 34
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U1 34
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U1 34
  • 63 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U1 34
  • 62 (a)
ManyToMany
Species where no ortholog for RNU1-80P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-80P Gene

ENSEMBL:
Gene Tree for RNU1-80P (if available)
TreeFam:
Gene Tree for RNU1-80P (if available)

Paralogs for RNU1-80P Gene

No data available for Paralogs for RNU1-80P Gene

Variants for RNU1-80P Gene

Additional Variant Information for RNU1-80P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-80P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-80P Gene

Disorders for RNU1-80P Gene

No disorders were found for RNU1-80P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-80P Gene

Publications for RNU1-80P Gene

No publications were found for RNU1-80P Gene.

Products for RNU1-80P Gene

Sources for RNU1-80P Gene

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