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Aliases for RNU1-56P Gene

Subcategory (RNA class) for RNU1-56P Gene

snRNA

Aliases for RNU1-56P Gene

  • RNA, U1 Small Nuclear 56, Pseudogene 2 3 5

External Ids for RNU1-56P Gene

ORGUL Members for RNU1-56P Gene

Previous GeneCards Identifiers for RNU1-56P Gene

  • GC0XM070250
  • GC00U934626

Summaries for RNU1-56P Gene

GeneCards Summary for RNU1-56P Gene

RNU1-56P (RNA, U1 Small Nuclear 56, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-56P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-56P Gene

Genomics for RNU1-56P Gene

GeneHancer (GH) Regulatory Elements for RNU1-56P Gene

Promoters and enhancers for RNU1-56P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI071074 Enhancer 0.8 Ensembl ENCODE 11.3 -52.9 -52948 0.4 RFX1 HLF MAX CEBPB CEBPG EP300 ZNF148 NFIL3 ATF4 CEBPA SNX12 IL2RG MED12 CXorf65 RNU1-56P NUTF2P7 GC0XM071059
GH0XI071052 Enhancer 0.7 Ensembl ENCODE 12 -32.9 -32863 1 SP1 PKNOX1 POLR2A SIN3A ZBTB33 FOS FOXO4 RNU1-56P NUTF2P7 IL2RG MED12 SOCS5P4 GC0XM071059
GH0XI071056 Enhancer 0.6 Ensembl 12 -36.6 -36563 0.4 CEBPB MAFG CBFA2T3 ZNF316 NFE2 EMSY MAFK NFE2L2 FOXO4 RNU1-56P NUTF2P7 IL2RG MED12 GC0XM071059 SOCS5P4 SNX12
GH0XI071073 Enhancer 0.6 ENCODE 11.3 -52.7 -52700 0 ZNF148 ATF4 RFX1 ZSCAN4 MAX STAT3 CEBPG EP300 SNX12 IL2RG MED12 CXorf65 RNU1-56P NUTF2P7 GC0XM071059
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU1-56P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-56P Gene

Genomic Locations for RNU1-56P Gene
chrX:71,020,275-71,020,438
(GRCh38/hg38)
Size:
164 bases
Orientation:
Minus strand

Genomic View for RNU1-56P Gene

Genes around RNU1-56P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-56P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-56P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-56P Gene

Proteins for RNU1-56P Gene

Post-translational modifications for RNU1-56P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-56P Gene

Domains & Families for RNU1-56P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-56P Gene

Function for RNU1-56P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-56P Gene

Localization for RNU1-56P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-56P Gene

Pathways & Interactions for RNU1-56P Gene

SuperPathways for RNU1-56P Gene

No Data Available

Interacting Proteins for RNU1-56P Gene

Gene Ontology (GO) - Biological Process for RNU1-56P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-56P Gene

Drugs & Compounds for RNU1-56P Gene

No Compound Related Data Available

Transcripts for RNU1-56P Gene

mRNA/cDNA for RNU1-56P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-56P Gene

No ASD Table

Relevant External Links for RNU1-56P Gene

GeneLoc Exon Structure for
RNU1-56P
ECgene alternative splicing isoforms for
RNU1-56P

Expression for RNU1-56P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-56P Gene

genes like me logo Genes that share expression patterns with RNU1-56P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-56P Gene

Orthologs for RNU1-56P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-56P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U1 34
  • 87 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U1 34
  • 84 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 34
  • 80 (a)
OneToOne
Species where no ortholog for RNU1-56P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-56P Gene

ENSEMBL:
Gene Tree for RNU1-56P (if available)
TreeFam:
Gene Tree for RNU1-56P (if available)

Paralogs for RNU1-56P Gene

No data available for Paralogs for RNU1-56P Gene

Variants for RNU1-56P Gene

Additional Variant Information for RNU1-56P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-56P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-56P Gene

Disorders for RNU1-56P Gene

No disorders were found for RNU1-56P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-56P Gene

Publications for RNU1-56P Gene

No publications were found for RNU1-56P Gene.

Products for RNU1-56P Gene

Sources for RNU1-56P Gene

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