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Aliases for RNU1-42P Gene

Subcategory (RNA class) for RNU1-42P Gene

snRNA

Aliases for RNU1-42P Gene

  • RNA, U1 Small Nuclear 42, Pseudogene 2 3 5

External Ids for RNU1-42P Gene

ORGUL Members for RNU1-42P Gene

Previous GeneCards Identifiers for RNU1-42P Gene

  • GC17M047029
  • GC00U936095

Summaries for RNU1-42P Gene

GeneCards Summary for RNU1-42P Gene

RNU1-42P (RNA, U1 Small Nuclear 42, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-42P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-42P Gene

Genomics for RNU1-42P Gene

Regulatory Elements for RNU1-42P Gene

Enhancers for RNU1-42P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H049020 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -72.5 -72475 3 ARID4B ZSCAN9 RFX5 EGR1 SCRT2 RCOR1 ZNF362 HMG20B CEBPB NFYC SNF8 PRAC1 RNU1-42P ENSG00000230532 ENSG00000238804 PRAC2 HOXB-AS4 HOXB9 IGF2BP1 ENSG00000255851
GH17H048914 1.3 Ensembl ENCODE dbSUPER 12.5 +34.0 33995 3 HDGF SIN3A YBX1 EBF1 BATF RELA ZNF121 EED FOS ATF7 UBE2Z SNF8 RNU1-42P ENSG00000238804 ATP5G1 TTLL6 PRAC1 PRAC2 NFE2L1 SUMO2P17
GH17H048906 1.4 ENCODE dbSUPER 10.9 +40.7 40710 4 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B UBE2Z ENSG00000262837 ENSG00000266601 ATP5G1 CALCOCO2 GIP ENSG00000250838 ENSG00000251461 RN7SL125P LINC02075
GH17H048799 0.9 ENCODE 10.3 +148.6 148609 3 ELF3 ARID4B THRB RAD21 RARA YY1 ZNF366 MIXL1 SP5 MXD4 ATP5G1 TTLL6 PRAC1 PRAC2 LOC105371811 HOXB13 ENSG00000238804 ENSG00000230532 RNU1-42P SNF8
GH17H048897 0.7 ENCODE 10.7 +51.4 51402 1 GATAD2A HLF MAFG CEBPB REST TGIF2 ZNF316 SSRP1 CEBPA NFE2 UBE2Z ENSG00000238804 ENSG00000230532 SNF8 RNU1-42P TTLL6 PRAC1 PRAC2 HOXB13 LOC105371811
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU1-42P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-42P Gene

Chromosome:
17
Start:
48,949,361 bp from pter
End:
48,949,520 bp from pter
Size:
160 bases
Orientation:
Minus strand

Genomic View for RNU1-42P Gene

Genes around RNU1-42P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-42P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-42P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-42P Gene

Proteins for RNU1-42P Gene

Post-translational modifications for RNU1-42P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-42P Gene

Domains & Families for RNU1-42P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-42P Gene

Function for RNU1-42P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-42P Gene

Localization for RNU1-42P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-42P Gene

Pathways & Interactions for RNU1-42P Gene

SuperPathways for RNU1-42P Gene

No Data Available

Interacting Proteins for RNU1-42P Gene

Gene Ontology (GO) - Biological Process for RNU1-42P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-42P Gene

Drugs & Compounds for RNU1-42P Gene

No Compound Related Data Available

Transcripts for RNU1-42P Gene

mRNA/cDNA for RNU1-42P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-42P Gene

No ASD Table

Relevant External Links for RNU1-42P Gene

GeneLoc Exon Structure for
RNU1-42P
ECgene alternative splicing isoforms for
RNU1-42P

Expression for RNU1-42P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-42P Gene

genes like me logo Genes that share expression patterns with RNU1-42P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-42P Gene

Orthologs for RNU1-42P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-42P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U1 34
  • 75 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26150 34
  • 69 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 34
  • 63 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U1 34
  • 58 (a)
ManyToMany
Species where no ortholog for RNU1-42P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-42P Gene

ENSEMBL:
Gene Tree for RNU1-42P (if available)
TreeFam:
Gene Tree for RNU1-42P (if available)

Paralogs for RNU1-42P Gene

No data available for Paralogs for RNU1-42P Gene

Variants for RNU1-42P Gene

Relevant External Links for RNU1-42P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-42P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-42P Gene

Disorders for RNU1-42P Gene

No disorders were found for RNU1-42P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-42P Gene

Publications for RNU1-42P Gene

No publications were found for RNU1-42P Gene.

Products for RNU1-42P Gene

Sources for RNU1-42P Gene

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