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Aliases for RNU1-40P Gene

Subcategory (RNA class) for RNU1-40P Gene


Aliases for RNU1-40P Gene

  • RNA, U1 Small Nuclear 40, Pseudogene 2 3

External Ids for RNU1-40P Gene

ORGUL Members for RNU1-40P Gene

Previous GeneCards Identifiers for RNU1-40P Gene

  • GC0YP028078
  • GC00U935426

Summaries for RNU1-40P Gene

GeneCards Summary for RNU1-40P Gene

RNU1-40P (RNA, U1 Small Nuclear 40, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU1-40P Gene

  • U1 spliceosomal RNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU1-40P Gene

Genomics for RNU1-40P Gene

Genomic Location for RNU1-40P Gene

25,928,979 bp from pter
25,929,142 bp from pter
164 bases
Plus strand

Genomic View for RNU1-40P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU1-40P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements and RefSeq DNA sequence for RNU1-40P Gene

Proteins for RNU1-40P Gene

Post-translational modifications for RNU1-40P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-40P Gene

Domains & Families for RNU1-40P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-40P Gene

Function for RNU1-40P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-40P Gene

Localization for RNU1-40P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU1-40P Gene

Pathways & Interactions for RNU1-40P Gene

SuperPathways for RNU1-40P Gene

No Data Available

Interacting Proteins for RNU1-40P Gene

Gene Ontology (GO) - Biological Process for RNU1-40P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU1-40P Gene

Drugs & Compounds for RNU1-40P Gene

No Compound Related Data Available

Transcripts for RNU1-40P Gene

mRNA/cDNA for RNU1-40P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-40P Gene

No ASD Table

Relevant External Links for RNU1-40P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU1-40P Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNU1-40P Gene

Orthologs for RNU1-40P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-40P Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia U1 36
  • 76 (a)
(Canis familiaris)
Mammalia U1 36
  • 78 (a)
(Mus musculus)
Mammalia Gm25308 36
  • 71 (a)
(Ornithorhynchus anatinus)
Mammalia U1 36
  • 69 (a)
(Pan troglodytes)
Mammalia U1 36
  • 94 (a)
U1 36
  • 98 (a)
U1 36
  • 98 (a)
U1 36
  • 99 (a)
(Anolis carolinensis)
Reptilia U1 36
  • 81 (a)
Species with no ortholog for RNU1-40P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-40P Gene

Gene Tree for RNU1-40P (if available)
Gene Tree for RNU1-40P (if available)

Paralogs for RNU1-40P Gene

No data available for Paralogs for RNU1-40P Gene

Variants for RNU1-40P Gene

Relevant External Links for RNU1-40P Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-40P Gene

Disorders for RNU1-40P Gene

genes like me logo Genes that share disorders with RNU1-40P: view

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-40P Gene

Publications for RNU1-40P Gene

No publications were found for RNU1-40P Gene.

Products for RNU1-40P Gene

Sources for RNU1-40P Gene

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