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Aliases for RNU1-3 Gene

Subcategory (RNA class) for RNU1-3 Gene


Quality Score for this RNA gene is


Aliases for RNU1-3 Gene

  • RNA, U1 Small Nuclear 3 2 3 5
  • RNA, U1G3 Small Nuclear 2 3
  • RNU1G3 3
  • HSD4 3

External Ids for RNU1-3 Gene

ORGUL Members for RNU1-3 Gene

Previous HGNC Symbols for RNU1-3 Gene

  • RNU1G3

Previous GeneCards Identifiers for RNU1-3 Gene

  • GC01U902381
  • GC01M016994

Summaries for RNU1-3 Gene

GeneCards Summary for RNU1-3 Gene

RNU1-3 (RNA, U1 Small Nuclear 3) is an RNA Gene, and is affiliated with the snRNA class. Among its related pathways are Spliceosomal Splicing Cycle.

Additional gene information for RNU1-3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-3 Gene

Genomics for RNU1-3 Gene

Regulatory Elements for RNU1-3 Gene

Enhancers for RNU1-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H016659 0.5 Ensembl dbSUPER 0.4 +7.7 7748 0 CROCCP2 RNU1-3
GH01H016665 0.2 dbSUPER 0.7 +0.4 442 2 RNU1-3 CROCCP2
GH01H016657 0.2 dbSUPER 0.4 +8.7 8664 0 CROCCP2 RNU1-3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU1-3 on UCSC Golden Path with GeneCards custom track

Promoters for RNU1-3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000002099 -252 1201

Genomic Location for RNU1-3 Gene

16,666,785 bp from pter
16,666,948 bp from pter
164 bases
Minus strand

Genomic View for RNU1-3 Gene

Genes around RNU1-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-3 Gene

Proteins for RNU1-3 Gene

Post-translational modifications for RNU1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-3 Gene

Domains & Families for RNU1-3 Gene

Gene Families for RNU1-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU1-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-3 Gene

Function for RNU1-3 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNU1-3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-3 Gene

Localization for RNU1-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-3 Gene

Pathways & Interactions for RNU1-3 Gene

SuperPathways for RNU1-3 Gene

SuperPathway Contained pathways
1 Spliceosomal Splicing Cycle
genes like me logo Genes that share pathways with RNU1-3: view

Pathways by source for RNU1-3 Gene

1 Qiagen pathway for RNU1-3 Gene

Interacting Proteins for RNU1-3 Gene

Gene Ontology (GO) - Biological Process for RNU1-3 Gene


No data available for SIGNOR curated interactions for RNU1-3 Gene

Drugs & Compounds for RNU1-3 Gene

No Compound Related Data Available

Transcripts for RNU1-3 Gene

mRNA/cDNA for RNU1-3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNU1-3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-3 Gene

No ASD Table

Relevant External Links for RNU1-3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU1-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-3 Gene

genes like me logo Genes that share expression patterns with RNU1-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-3 Gene

Orthologs for RNU1-3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-3 Gene

Organism Taxonomy Gene Similarity Type Details
(Canis familiaris)
Mammalia U1 34
  • 100 (a)
(Pan troglodytes)
Mammalia U1 34
  • 100 (a)
(Bos Taurus)
Mammalia U1 34
  • 99 (a)
Species where no ortholog for RNU1-3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-3 Gene

Gene Tree for RNU1-3 (if available)
Gene Tree for RNU1-3 (if available)

Paralogs for RNU1-3 Gene

No data available for Paralogs for RNU1-3 Gene

Variants for RNU1-3 Gene

Sequence variations from dbSNP and Humsavar for RNU1-3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111981168 -- 16,668,506(+) TCCAG(A/G)GACCT upstream-variant-2KB
rs11488482 -- 16,667,489(+) ATTCC(G/T)CTTGC upstream-variant-2KB
rs12135667 -- 16,668,921(-) atgtc(A/G)tggct upstream-variant-2KB
rs12140082 -- 16,668,767(-) AGAAA(A/G)CATTT upstream-variant-2KB
rs1759224 -- 16,667,730(+) CAAGC(A/G)TGGTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNU1-3 Gene

Variant ID Type Subtype PubMed ID
dgv101n100 CNV gain 25217958
dgv104n100 CNV loss 25217958
dgv105n100 CNV gain+loss 25217958
dgv106n100 CNV gain 25217958
dgv107n100 CNV gain 25217958
dgv108n100 CNV gain 25217958
dgv109n100 CNV gain+loss 25217958
dgv10e201 CNV deletion 23290073
dgv110n100 CNV loss 25217958
dgv111n100 CNV gain 25217958
dgv112n100 CNV loss 25217958
dgv113n100 CNV gain 25217958
dgv114n100 CNV gain+loss 25217958
dgv115n100 CNV loss 25217958
dgv116n100 CNV gain+loss 25217958
dgv117n100 CNV gain+loss 25217958
dgv118n100 CNV gain 25217958
dgv119n100 CNV gain 25217958
dgv120n100 CNV gain 25217958
dgv12e214 CNV gain 21293372
dgv13n17 CNV loss 16327808
dgv164n54 CNV loss 21841781
dgv166n54 CNV gain+loss 21841781
dgv167n54 CNV loss 21841781
dgv1865n100 CNV loss 25217958
dgv1e203 CNV gain+loss 21179565
dgv1n68 CNV loss 17160897
dgv20n111 CNV deletion 26073780
dgv20n67 CNV gain 20364138
dgv21e199 CNV deletion 23128226
dgv21n111 CNV deletion 26073780
dgv21n67 CNV gain 20364138
dgv22n111 CNV deletion 26073780
dgv22n67 CNV gain 20364138
dgv23n67 CNV gain 20364138
dgv327n100 CNV gain 25217958
dgv360n100 CNV loss 25217958
dgv373n100 CNV gain 25217958
dgv374n100 CNV loss 25217958
dgv375n100 CNV gain+loss 25217958
dgv376n100 CNV loss 25217958
dgv377n100 CNV gain+loss 25217958
dgv378n100 CNV gain 25217958
dgv379n100 CNV loss 25217958
dgv380n100 CNV gain+loss 25217958
dgv381n100 CNV gain 25217958
dgv383n100 CNV loss 25217958
dgv389n100 CNV loss 25217958
dgv392n100 CNV gain 25217958
dgv393n100 CNV gain 25217958
dgv395n100 CNV loss 25217958
dgv396n100 CNV loss 25217958
dgv397n100 CNV loss 25217958
dgv398n100 CNV loss 25217958
dgv399n100 CNV gain 25217958
dgv39n100 CNV gain 25217958
dgv3e213 CNV loss 24956385
dgv400n100 CNV gain 25217958
dgv401n100 CNV loss 25217958
dgv402n100 CNV loss 25217958
dgv403n100 CNV gain+loss 25217958
dgv404n100 CNV gain 25217958
dgv40n100 CNV gain 25217958
dgv41n100 CNV gain 25217958
dgv42n100 CNV loss 25217958
dgv43n100 CNV loss 25217958
dgv44n100 CNV gain+loss 25217958
dgv45n100 CNV gain 25217958
dgv47e59 CNV duplication 20981092
dgv47n106 CNV duplication 24896259
dgv48n100 CNV gain+loss 25217958
dgv49e59 CNV duplication 20981092
dgv49n100 CNV loss 25217958
dgv49n106 CNV duplication 24896259
dgv50n100 CNV gain 25217958
dgv50n106 CNV duplication 24896259
dgv51e59 CNV duplication 20981092
dgv51n100 CNV loss 25217958
dgv52e59 CNV duplication 20981092
dgv52n100 CNV gain+loss 25217958
dgv536n54 CNV gain 21841781
dgv53n100 CNV loss 25217958
dgv540n54 CNV loss 21841781
dgv541n54 CNV gain+loss 21841781
dgv542n54 CNV loss 21841781
dgv543n54 CNV gain+loss 21841781
dgv545n54 CNV loss 21841781
dgv546n54 CNV gain 21841781
dgv549n54 CNV loss 21841781
dgv54e59 CNV duplication 20981092
dgv54n100 CNV gain 25217958
dgv550n54 CNV gain+loss 21841781
dgv554n54 CNV loss 21841781
dgv557n54 CNV loss 21841781
dgv55n100 CNV gain+loss 25217958
dgv560n54 CNV loss 21841781
dgv561n54 CNV loss 21841781
dgv59n100 CNV gain 25217958
dgv60n100 CNV loss 25217958
dgv61n100 CNV gain+loss 25217958
dgv62n100 CNV gain 25217958
dgv63n100 CNV gain 25217958
dgv65n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
dgv66n100 CNV gain 25217958
dgv68n100 CNV gain 25217958
dgv70n100 CNV gain+loss 25217958
dgv71n100 CNV loss 25217958
dgv72n100 CNV gain+loss 25217958
dgv73n100 CNV gain 25217958
dgv74n100 CNV gain 25217958
dgv75n100 CNV gain 25217958
dgv76n100 CNV gain 25217958
dgv77n100 CNV loss 25217958
dgv78n100 CNV loss 25217958
dgv82n100 CNV gain+loss 25217958
dgv83n100 CNV loss 25217958
dgv85n100 CNV gain 25217958
dgv86n100 CNV gain 25217958
dgv87n100 CNV loss 25217958
dgv89n100 CNV gain+loss 25217958
dgv90n100 CNV gain 25217958
dgv91n100 CNV gain+loss 25217958
dgv92n100 CNV gain 25217958
dgv93n100 CNV gain 25217958
esv1007795 OTHER inversion 20482838
esv21838 CNV gain+loss 19812545
esv2421455 CNV duplication 20811451
esv2422083 OTHER complex 20811451
esv26111 CNV gain+loss 19812545
esv2678817 CNV deletion 23128226
esv2744430 CNV deletion 23290073
esv2750808 CNV gain 17911159
esv2750816 CNV gain 17911159
esv2758925 CNV gain+loss 17122850
esv2761299 CNV gain+loss 21179565
esv2761826 CNV loss 21179565
esv2930456 CNV duplication 24192839
esv29642 CNV gain+loss 19812545
esv29948 CNV loss 18421352
esv29988 CNV loss 17803354
esv33046 CNV loss 17666407
esv3372391 CNV duplication 20981092
esv3385457 CNV duplication 20981092
esv33965 CNV gain+loss 17666407
esv3423215 CNV duplication 20981092
esv34697 CNV gain 17911159
esv3577752 CNV loss 25503493
esv3584587 CNV gain 24956385
esv3584603 CNV loss 24956385
esv3584604 CNV loss 24956385
esv3584606 CNV loss 24956385
esv3892303 CNV gain+loss 25118596
esv3892414 CNV gain 25118596
esv3894156 CNV loss 25118596
esv3894189 CNV gain+loss 25118596
esv990069 CNV loss 20482838
nsv1000319 CNV gain+loss 25217958
nsv1000674 CNV gain 25217958
nsv1003019 CNV loss 25217958
nsv1003688 CNV gain 25217958
nsv1004435 CNV gain 25217958
nsv1004807 CNV gain+loss 25217958
nsv1004978 CNV gain+loss 25217958
nsv1005055 CNV loss 25217958
nsv1005442 CNV loss 25217958
nsv1006302 CNV loss 25217958
nsv1006828 CNV gain+loss 25217958
nsv1008129 CNV gain+loss 25217958
nsv1008351 CNV gain+loss 25217958
nsv1008864 CNV gain 25217958
nsv1009050 CNV loss 25217958
nsv1011871 CNV gain 25217958
nsv1012720 CNV gain 25217958
nsv1013011 CNV gain 25217958
nsv1014044 CNV gain 25217958
nsv1014796 CNV loss 25217958
nsv1042294 CNV gain 25217958
nsv1049048 CNV gain 25217958
nsv1075366 CNV duplication 25765185
nsv1075777 CNV duplication 25765185
nsv1077283 CNV duplication 25765185
nsv1077306 CNV duplication 25765185
nsv1116446 OTHER inversion 24896259
nsv1124592 CNV duplication 24896259
nsv1128591 CNV duplication 24896259
nsv1132304 CNV duplication 24896259
nsv1132314 CNV duplication 24896259
nsv1139475 CNV duplication 24896259
nsv1145756 CNV duplication 26484159
nsv1145790 CNV duplication 26484159
nsv1151399 CNV duplication 26484159
nsv1152149 CNV duplication 26484159
nsv1154047 CNV duplication 26484159
nsv1160181 CNV duplication 26073780
nsv1161242 CNV duplication 26073780
nsv1161255 CNV duplication 26073780
nsv1161259 CNV duplication 26073780
nsv1161529 OTHER complex 26073780
nsv3965 CNV insertion 18451855
nsv428421 CNV gain+loss 18775914
nsv433184 CNV loss 18776910
nsv436652 OTHER inversion 17901297
nsv436814 CNV insertion 17901297
nsv437206 CNV loss 16327808
nsv437207 CNV loss 16327808
nsv441790 CNV gain+loss 18776908
nsv442727 CNV gain 18776908
nsv469795 CNV gain+loss 16826518
nsv471655 CNV gain+loss 15918152
nsv499102 OTHER inversion 21111241
nsv499577 OTHER inversion 21111241
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv514006 CNV gain+loss 21397061
nsv545667 CNV loss 21841781
nsv545672 CNV loss 21841781
nsv564194 CNV loss 21841781
nsv7173 OTHER inversion 18451855
nsv7251 OTHER inversion 18451855
nsv821037 CNV duplication 20802225
nsv821511 CNV duplication 20802225
nsv821743 CNV gain 20364138
nsv829625 CNV gain 20364138
nsv831481 CNV gain 17160897
nsv834247 CNV gain+loss 17160897
nsv834258 CNV loss 17160897
nsv834269 CNV loss 17160897
nsv834280 CNV loss 17160897
nsv92 OTHER inversion 15895083
nsv93 OTHER inversion 15895083
nsv9324 CNV gain+loss 18304495
nsv945793 CNV duplication 23825009
nsv945795 CNV duplication 23825009
nsv945797 CNV duplication 23825009
nsv945800 CNV duplication 23825009
nsv946357 CNV duplication 23825009
nsv952729 CNV duplication 24416366
nsv954846 CNV duplication 24416366
nsv954848 CNV duplication 24416366
nsv954849 CNV duplication 24416366
nsv954853 CNV duplication 24416366
nsv977451 CNV duplication 23825009
nsv998643 CNV gain 25217958

Relevant External Links for RNU1-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU1-3 Gene

Disorders for RNU1-3 Gene

Relevant External Links for RNU1-3

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RNU1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU1-3 Gene

Publications for RNU1-3 Gene

  1. Human U1 loci: genes for human U1 RNA have dramatically similar genomic environments. (PMID: 6179629) Manser T … Gesteland RF (Cell 1982) 2 3 60
  2. Human U1 small nuclear RNA genes: extensive conservation of flanking sequences suggests cycles of gene amplification and transposition. (PMID: 3837185) Bernstein LB … Weiner AM (Molecular and cellular biology 1985) 3 60

Products for RNU1-3 Gene

Sources for RNU1-3 Gene

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