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Aliases for RNU1-27P Gene

Subcategory (RNA class) for RNU1-27P Gene

snRNA

Aliases for RNU1-27P Gene

  • RNA, U1 Small Nuclear 27, Pseudogene 2 3
  • RNA, U1 Small Nuclear 7, Pseudogene 2 3
  • RNU1-7P 3
  • RNU1-7 3

External Ids for RNU1-27P Gene

ORGUL Members for RNU1-27P Gene

Previous Symbols for RNU1-27P Gene

  • RNU1-7P

Summaries for RNU1-27P Gene

GeneCards Summary for RNU1-27P Gene

RNU1-27P (RNA, U1 Small Nuclear 27, Pseudogene) is a Pseudogene, and belongs to snRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-27P Gene

Genomics for RNU1-27P Gene

Genomic Location for RNU1-27P Gene

Start:
34,546,714 bp from pter
End:
34,546,877 bp from pter
Size:
164 bases
Orientation:
Plus strand

Genomic View for RNU1-27P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU1-27P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-27P Gene

No data available for Regulatory Elements for RNU1-27P Gene

Proteins for RNU1-27P Gene

Post-translational modifications for RNU1-27P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-27P Gene

Domains for RNU1-27P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNU1-27P Gene

Function for RNU1-27P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU1-27P Gene

Localization for RNU1-27P Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU1-27P Gene

Pathways for RNU1-27P Gene

SuperPathways for RNU1-27P Gene

No Data Available

Interacting Proteins for RNU1-27P Gene

Gene Ontology (GO) - Biological Process for RNU1-27P Gene

None

No data available for Pathways by source for RNU1-27P Gene

Transcripts for RNU1-27P Gene

mRNA/cDNA for RNU1-27P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-27P Gene

No ASD Table

Relevant External Links for RNU1-27P Gene

GeneLoc Exon Structure for
RNU1-27P
ECgene alternative splicing isoforms for
RNU1-27P

Expression for RNU1-27P Gene

mRNA expression in normal human tissues for RNU1-27P Gene

genes like me logo Genes that share expressions with RNU1-27P: view

Orthologs for RNU1-27P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-27P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 37
  • 100 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 37
  • 100 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 37
  • 100 (a)
ManyToMany
Species with no ortholog for RNU1-27P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-27P Gene

ENSEMBL:
Gene Tree for RNU1-27P (if available)
TreeFam:
Gene Tree for RNU1-27P (if available)

Paralogs for RNU1-27P Gene

No data available for Paralogs for RNU1-27P Gene

Variants for RNU1-27P Gene

Sequence variations from dbSNP and Humsavar for RNU1-27P Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs57884173 -- 34,545,580(+) AAGAA(-/GAAGAAGAAGAAGAAGAAGAAGAAGAA)TACAA upstream-variant-2KB
rs60676750 -- 34,545,456(+) AGGCA(A/G)GAGAA upstream-variant-2KB
rs111697655 -- 34,545,553(+) TCACA(G/T)AAGAA upstream-variant-2KB
rs113219077 -- 34,547,022(+) ACCCC(C/G)CGGGG downstream-variant-500B
rs113957554 -- 34,547,154(+) GTGTA(A/G)AGGAA downstream-variant-500B

Relevant External Links for RNU1-27P Gene

HapMap Linkage Disequilibrium report
RNU1-27P

No data available for Structural Variations from Database of Genomic Variants (DGV) for RNU1-27P Gene

Disorders for RNU1-27P Gene

No disorders were found for RNU1-27P Gene.

No data available for UniProtKB/Swiss-Prot for RNU1-27P Gene

Publications for RNU1-27P Gene

  1. Human U1 loci: genes for human U1 RNA have dramatically similar genomic environments. (PMID: 6179629) Manser T. … Gesteland R.F. (Cell 1982) 3

Products for RNU1-27P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNU1-27P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNU1-27P
    • Block miRNA regulation of RNU1-27P using miScript Target Protectors

    Sources for RNU1-27P Gene

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