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Aliases for RNU1-22P Gene

Subcategory (RNA class) for RNU1-22P Gene

snRNA

Aliases for RNU1-22P Gene

  • RNA, U1 Small Nuclear 22, Pseudogene 2 3

External Ids for RNU1-22P Gene

ORGUL Members for RNU1-22P Gene

Summaries for RNU1-22P Gene

GeneCards Summary for RNU1-22P Gene

RNU1-22P (RNA, U1 Small Nuclear 22, Pseudogene) is a Pseudogene, and belongs to snRNA RNA class.

fRNAdb sequence ontologies for RNU1-22P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

  • U1 spliceosomal RNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.

View fRNAdb secondary structures for RNU1-22P

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU1-22P Gene

Genomics for RNU1-22P Gene

Genomic Location for RNU1-22P Gene

Start:
3,086,143 bp from pter
End:
3,086,300 bp from pter
Size:
158 bases
Orientation:
Plus strand

Genomic View for RNU1-22P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU1-22P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-22P Gene

ORGUL Member Location for RNU1-22P Gene

ORGUL Member Location for RNU1-22P gene

No data available for Regulatory Elements for RNU1-22P Gene

Proteins for RNU1-22P Gene

Post-translational modifications for RNU1-22P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-22P Gene

Domains for RNU1-22P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNU1-22P Gene

Function for RNU1-22P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU1-22P Gene

Localization for RNU1-22P Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU1-22P Gene

Pathways for RNU1-22P Gene

SuperPathways for RNU1-22P Gene

No Data Available

Interacting Proteins for RNU1-22P Gene

Gene Ontology (GO) - Biological Process for RNU1-22P Gene

None

No data available for Pathways by source for RNU1-22P Gene

Transcripts for RNU1-22P Gene

fRNAdb Secondary structures for RNU1-22P Gene

  • RF00003;U1;AADB02017055.1/261796-261639

mRNA/cDNA for RNU1-22P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-22P Gene

No ASD Table

Relevant External Links for RNU1-22P Gene

GeneLoc Exon Structure for
RNU1-22P
ECgene alternative splicing isoforms for
RNU1-22P

Expression for RNU1-22P Gene

mRNA expression in normal human tissues for RNU1-22P Gene

genes like me logo Genes that share expressions with RNU1-22P: view

Orthologs for RNU1-22P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-22P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 37
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U1 37
  • 62 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26505 37
  • 68 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U1 37
  • 58 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U1 37
  • 62 (a)
OneToMany
Species with no ortholog for RNU1-22P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-22P Gene

ENSEMBL:
Gene Tree for RNU1-22P (if available)
TreeFam:
Gene Tree for RNU1-22P (if available)

Paralogs for RNU1-22P Gene

No data available for Paralogs for RNU1-22P Gene

Variants for RNU1-22P Gene

Relevant External Links for RNU1-22P Gene

HapMap Linkage Disequilibrium report
RNU1-22P

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RNU1-22P Gene

Disorders for RNU1-22P Gene

No disorders were found for RNU1-22P Gene.

No data available for UniProtKB/Swiss-Prot for RNU1-22P Gene

Publications for RNU1-22P Gene

No publications were found for RNU1-22P Gene.

Products for RNU1-22P Gene

Sources for RNU1-22P Gene

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