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Aliasesfor RNU1-22P gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Subcategory (RNA class): snRNAQuality score for the ORGUL clustered with this gene is 4 Aliases RNA, U1 Small Nuclear 22, Pseudogene 1 2
External Ids: HGNC: 41963 1 Entrez Gene: 100873863 2 Ensembl: ENSG00000200204 7 Export aliases for RNU1-22P gene to outside databases Previous GC identifers: GC00U933874 GC16P003137
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Summariesfor RNU1-22P gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section fRNAdb sequence ontology for RNU1-22P: U1 spliceosomal RNA - U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.
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Genomic Viewsfor RNU1-22P gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for RNU1-22P Other transcription factors Search SABiosciences Chromatin IP Primers for RNU1-22P Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU1-22P
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Ensembl cytogenetic band: 16p13.3 HGNC cytogenetic band: 16p13.3 RNU1-22P Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P003138: view genomic region
(about GC identifiers )
Start: 3,136,144 bp from pter End:
3,136,301 bp from pter
Size: 158 bases Orientation:
plus strand
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Proteinsfor RNU1-22P gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB: --
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Protein
Domains /for RNU1-22P gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
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Functionfor RNU1-22P gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Animal Models: Cell Line GenScript Custom overexpressing Cell Line Services for RNU1-22P Search LifeMap BioReagents cell lines for RNU1-22P
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Pathways & Interactionsfor RNU1-22P gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNU1-22P
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Drugs & Compoundsfor RNU1-22P gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RNU1-22P RNU1-22P
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Transcriptsfor RNU1-22P gene (Secondary structures according to
fRNAdb ,Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,EMD Millipore ,
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000363334(snRNA) GeneLoc Exon Structure
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Expression for RNU1-22P gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RNU1-22P expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: -- About this image SABiosciences Custom PCR Arrays for RNU1-22P
Primer Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNU1-22P Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU1-22P Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU1-22P
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Orthologsfor RNU1-22P gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
ENSEMBL Gene Tree for RNU1-22P (if available)TreeFam Gene Tree for RNU1-22P (if available)
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Paralogsfor RNU1-22P gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RNU1-22P gene RNU1-5 2 RNU1-16P 2 ENSG00000207322 2 ENSG00000200885 2 ENSG00000252135 2 ENSG00000202496 2 ENSG00000238554 2 ENSG00000212456 2 ENSG00000206791 2 RNU1-12P 2 ENSG00000201616 2 ENSG00000201170 2 ENSG00000201142 2 ENSG00000200731 2 ENSG00000202167 2 ENSG00000206835 2 ENSG00000200338 2 ENSG00000202077 2 ENSG00000207182 2 RNU1-17P 2 ENSG00000206917 2 ENSG00000201699 2 ENSG00000200807 2 ENSG00000207501 2 ENSG00000212605 2 ENSG00000252491 2 ENSG00000201976 2 ENSG00000251916 2 ENSG00000252625 2 ENSG00000206629 2 ENSG00000202125 2 ENSG00000238833 2 RNU1-15P 2 ENSG00000199773 2 RNU1-19P 2 ENSG00000207205 2 ENSG00000207110 2 ENSG00000206687 2 ENSG00000201922 2 ENSG00000199836 2 ENSG00000238898 2 ENSG00000199652 2 RNU1-20P 2 ENSG00000202408 2 RNU1-6 2 RNU1-14P 2 ENSG00000252209 2 ENSG00000252166 2 ENSG00000206968 2 ENSG00000199361 2 ENSG00000212473 2 ENSG00000212153 2 ENSG00000207340 2 ENSG00000199805 2 ENSG00000202000 2 ENSG00000199846 2 ENSG00000201271 2 RNU1-13P 2 ENSG00000212609 2 ENSG00000202313 2 ENSG00000199879 2 ENSG00000200903 2 ENSG00000239023 2 ENSG00000252925 2 RNU1-9 2 ENSG00000199283 2 ENSG00000202317 2 RNU1-3 2 ENSG00000201119 2 ENSG00000201558 2 RNU1-8 2 ENSG00000252842 2 ENSG00000252099 2 ENSG00000252681 2 ENSG00000194647 2 RNU1-4 2 ENSG00000206908 2 ENSG00000201574 2 ENSG00000251970 2 ENSG00000200340 2 ENSG00000207154 2 ENSG00000239194 2 ENSG00000200789 2 ENSG00000200296 2 ENSG00000252311 2 ENSG00000212172 2 ENSG00000251917 2 RNU1-18P 2 ENSG00000202215 2 ENSG00000253000 2 ENSG00000206698 2 RNU1-1 2 ENSG00000212544 2 ENSG00000200745 2 ENSG00000199497 2 ENSG00000201291 2 ENSG00000200997 2 ENSG00000207106 2 ENSG00000207175 2 ENSG00000199469 2 ENSG00000207220 2 ENSG00000200597 2 ENSG00000207349 2 ENSG00000212424 2 RNU1-7 2 ENSG00000252513 2 ENSG00000201105 2 ENSG00000199687 2 ENSG00000206820 2 ENSG00000202199 2 ENSG00000252990 2 ENSG00000206828 2 ENSG00000201910 2 ENSG00000201183 2 ENSG00000207056 2 ENSG00000252426 2 ENSG00000253089 2 ENSG00000199554 2 ENSG00000252105 2 ENSG00000199488 2 ENSG00000212550 2 ENSG00000212170 2 ENSG00000194297 2 RNU1-21P 2 ENSG00000252826 2 RNU1-23P 2 ENSG00000207339 2 ENSG00000201493 2 ENSG00000238421 2 ENSG00000201737 2 ENSG00000207201 2 ENSG00000200800 2 ENSG00000201033 2 ENSG00000206624 2 ENSG00000252850 2 ENSG00000202380 2 RNU1-10P 2 ENSG00000206694 2 RNU1-24P 2 ENSG00000252561 2 RNU1-11P 2 RNU1-2 2 ENSG00000200975 2 ENSG00000199426 2 About GeneDecksing
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Genomic Variantsfor RNU1-22P gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor RNU1-22P gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
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Publicationsfor RNU1-22P gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section --
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External Searches for RNU1-22P gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RNU1-22P gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RNU1-22P gene
(According to HUGE )
About This Section --
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Specialized Databases showing RNU1-22P gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for RNU1-22P gene: RNU1-22P GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RNU1-22P gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNU1-22P Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNU1-22P QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU1-22P Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNU1-22P Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU1-22P Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU1-22P
Search ThermoFisher Antibodies for RNU1-22P
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNU1-22P
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