RNU1-21P Gene
pseudogene GIFtS: 12
GCID: GC11P123635
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RNA, U1 small nuclear 21, pseudogene
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Aliases
for RNU1-21P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): snRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| RNA, U1 Small Nuclear 21, Pseudogene1 2 |
| External Ids: | HGNC: 419471 | Entrez Gene: 1008738622 | Ensembl: ENSG000002001977 |
Export aliases for RNU1-21P gene to outside databasesPrevious GC identifer: GC00U933893
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Summaries
for RNU1-21P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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-- |
Genomic Views
for RNU1-21P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for RNU1-21P
Other transcription factors
Search SABiosciences Chromatin IP Primers for RNU1-21P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU1-21P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Ensembl cytogenetic band: 11q24.1 HGNC cytogenetic band: 11q24.1RNU1-21P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P123635: view genomic region
(about GC identifiers)
Start:
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123,634,635 bp from pter |
End:
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123,634,797 bp from pter |
Size:
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163 bases |
Orientation:
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plus strand |
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Proteins
for RNU1-21P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for RNU1-21P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- |
Function
for RNU1-21P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Pathways & Interactions
for RNU1-21P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNU1-21P
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Drugs & Compounds
for RNU1-21P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RNU1-21P
Search CenterWatch for drugs/clinical trials and news about RNU1-21P 
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Transcripts
for RNU1-21P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000363327(snRNA)
GeneLoc Exon Structure
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Expression
for RNU1-21P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RNU1-21P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for RNU1-21P
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNU1-21P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU1-21P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU1-21P |
Orthologs
for RNU1-21P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for RNU1-21P (if available)
TreeFam Gene Tree for RNU1-21P (if available) |
Paralogs
for RNU1-21P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RNU1-21P gene
- RNU1-52 RNU1-16P2 ENSG000002073222 ENSG000002008852 ENSG000002521352 ENSG000002024962 ENSG000002385542 ENSG000002124562
- ENSG000002067912 RNU1-12P2 ENSG000002016162 ENSG000002011702 ENSG000002011422 ENSG000002007312 ENSG000002021672 ENSG000002068352
- ENSG000002003382 ENSG000002020772 ENSG000002071822 RNU1-17P2 ENSG000002069172 ENSG000002016992 ENSG000002008072 ENSG000002075012
- ENSG000002126052 ENSG000002524912 ENSG000002019762 ENSG000002519162 ENSG000002526252 ENSG000002066292 ENSG000002021252 ENSG000002388332
- RNU1-15P2 ENSG000001997732 RNU1-19P2 ENSG000002072052 ENSG000002071102 ENSG000002066872 ENSG000002019222 ENSG000001998362
- ENSG000002388982 ENSG000001996522 RNU1-20P2 ENSG000002024082 RNU1-62 RNU1-14P2 ENSG000002522092 ENSG000002521662
- ENSG000002069682 ENSG000001993612 ENSG000002124732 ENSG000002121532 ENSG000002073402 ENSG000001998052 ENSG000002020002 ENSG000001998462
- ENSG000002012712 RNU1-13P2 ENSG000002126092 ENSG000002023132 ENSG000001998792 ENSG000002009032 ENSG000002390232 ENSG000002529252
- RNU1-92 ENSG000001992832 ENSG000002023172 RNU1-32 ENSG000002011192 ENSG000002015582 RNU1-82 ENSG000002528422
- ENSG000002520992 ENSG000002526812 ENSG000001946472 RNU1-42 ENSG000002069082 ENSG000002015742 ENSG000002519702 ENSG000002003402
- ENSG000002071542 ENSG000002391942 ENSG000002007892 ENSG000002002962 ENSG000002523112 ENSG000002121722 ENSG000002519172 RNU1-18P2
- ENSG000002022152 ENSG000002530002 ENSG000002066982 RNU1-12 ENSG000002125442 ENSG000002007452 ENSG000001994972 ENSG000002012912
- ENSG000002009972 ENSG000002071062 ENSG000002071752 ENSG000001994692 ENSG000002072202 ENSG000002005972 ENSG000002073492 ENSG000002124242
- RNU1-72 ENSG000002525132 ENSG000002011052 ENSG000001996872 ENSG000002068202 ENSG000002021992 ENSG000002529902 ENSG000002068282
- ENSG000002019102 ENSG000002011832 ENSG000002070562 ENSG000002524262 ENSG000002530892 ENSG000001995542 RNU1-22P2 ENSG000002521052
- ENSG000001994882 ENSG000002125502 ENSG000002121702 ENSG000001942972 ENSG000002528262 RNU1-23P2 ENSG000002073392 ENSG000002014932
- ENSG000002384212 ENSG000002017372 ENSG000002072012 ENSG000002008002 ENSG000002010332 ENSG000002066242 ENSG000002528502 ENSG000002023802
- RNU1-10P2 ENSG000002066942 RNU1-24P2 ENSG000002525612 RNU1-11P2 RNU1-22 ENSG000002009752 ENSG000001994262
RNU1-21P for paralogs About GeneDecksing
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Genomic Variants
for RNU1-21P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for RNU1-21P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for RNU1-21P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
| -- |
External Searches for RNU1-21P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing RNU1-21P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing RNU1-21P gene
(According to HUGE)
About This Section
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Specialized Databases showing RNU1-21P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for RNU1-21P gene:
Search GeneIP for patents involving RNU1-21P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RNU1-21P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNU1-21P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNU1-21P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU1-21P | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNU1-21P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU1-21P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU1-21P |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for RNU1-21P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNU1-21P |
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GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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