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RNU1-2 Gene(RNA Gene)

RNA, U1 Small Nuclear 2

GCID:
GC01P016895
GIFtS:
12
Genes Participants
UDN Logo

Aliases for RNU1-2 Gene

Subcategory (RNA class) for RNU1-2 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU1-2 Gene

  • RNA, U1 Small Nuclear 2 2 3 5
  • RNA, U1C1 Small Nuclear 2 3
  • RNA, U1C2 Small Nuclear 2 3
  • RNU1C1 3
  • RNU1C2 3
  • U1C21 3
  • U1C1 3

External Ids for RNU1-2 Gene

ORGUL Members for RNU1-2 Gene

Previous HGNC Symbols for RNU1-2 Gene

  • RNU1C1
  • RNU1C2

Previous GeneCards Identifiers for RNU1-2 Gene

  • GC01U902390
  • GC01P017224
  • GC01P017227
  • GC01P017233

Summaries for RNU1-2 Gene

GeneCards Summary for RNU1-2 Gene

RNU1-2 (RNA, U1 Small Nuclear 2) is an RNA Gene, and is affiliated with the snRNA class. Among its related pathways are Spliceosomal Splicing Cycle.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-2 Gene

Genomics for RNU1-2 Gene

Products:

  1. Regulatory Element

Regulatory Elements for RNU1-2 Gene

Enhancers for RNU1-2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNU1-2 on UCSC Golden Path with GeneCards custom track

Promoters for RNU1-2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNU1-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-2 Gene

Chromosome:
1
Start:
16,895,980 bp from pter
End:
16,896,143 bp from pter
Size:
164 bases
Orientation:
Plus strand

Genomic View for RNU1-2 Gene

Genes around RNU1-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU1-2 Gene

Proteins for RNU1-2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU1-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-2 Gene

Domains & Families for RNU1-2 Gene

Gene Families for RNU1-2 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU1-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-2 Gene

Function for RNU1-2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-2 Gene

Localization for RNU1-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU1-2 Gene

Pathways & Interactions for RNU1-2 Gene

SuperPathways for RNU1-2 Gene

PathCards logoMore details on SuperPathways for RNU1-2
Superpath Contained pathways
1 Spliceosomal Splicing Cycle
Spliceosomal Splicing Cycle
1
genes like me logo Genes that share pathways with RNU1-2: view

Pathways by source for RNU1-2 Gene

1 Qiagen pathway for RNU1-2 Gene

Interacting Proteins for RNU1-2 Gene

Gene Ontology (GO) - Biological Process for RNU1-2 Gene

None

No data available for SIGNOR curated interactions for RNU1-2 Gene

Drugs & Compounds for RNU1-2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU1-2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for RNU1-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-2 Gene

No ASD Table

Relevant External Links for RNU1-2 Gene

GeneLoc Exon Structure for
RNU1-2
ECgene alternative splicing isoforms for
RNU1-2

Expression for RNU1-2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for RNU1-2 Gene

mRNA expression in normal human tissues for RNU1-2 Gene
mRNA expression by GTEx for RNU1-2 Gene
genes like me logo Genes that share expression patterns with RNU1-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNU1-2 Gene

Orthologs for RNU1-2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia U1 36
  • 99 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia U1 36
  • 99 (a)
 OneToMany
chimpanzee
(Pan troglodytes)
 Mammalia U1 36
  • 99 (a)
 OneToOne
Species with no ortholog for RNU1-2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-2 Gene

ENSEMBL:
Gene Tree for RNU1-2 (if available)
TreeFam:
Gene Tree for RNU1-2 (if available)

Paralogs for RNU1-2 Gene

No data available for Paralogs for RNU1-2 Gene

Variants for RNU1-2 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for RNU1-2 Gene

Disorders for RNU1-2 Gene

No disorders were found for RNU1-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-2 Gene

Publications for RNU1-2 Gene

  1. Human U1 small nuclear RNA genes: extensive conservation of flanking sequences suggests cycles of gene amplification and transposition. (PMID: 3837185) Bernstein L.B. … Weiner A.M. (Mol. Cell. Biol. 1985) 2 3 67

Products for RNU1-2 Gene

Sources for RNU1-2 Gene

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