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Aliases for RNU1-140P Gene

Subcategory (RNA class) for RNU1-140P Gene

snRNA

Aliases for RNU1-140P Gene

  • RNA, U1 Small Nuclear 140, Pseudogene 2 3 5

External Ids for RNU1-140P Gene

ORGUL Members for RNU1-140P Gene

Previous GeneCards Identifiers for RNU1-140P Gene

  • GC05P103435
  • GC00U935782

Summaries for RNU1-140P Gene

GeneCards Summary for RNU1-140P Gene

RNU1-140P (RNA, U1 Small Nuclear 140, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-140P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-140P Gene

Genomics for RNU1-140P Gene

Regulatory Elements for RNU1-140P Gene

Enhancers for RNU1-140P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H104188 0.8 ENCODE 0.2 +90.5 90525 1 BCOR ETV1 JUN ZNF175 ZMYM3 MAX CHAMP1 FOSL1 TRIM24 HOMEZ RN7SL255P RNU1-140P
GH05H104179 0.8 ENCODE 0.2 +80.4 80401 0 HDGF CTCF PKNOX1 ATF1 RB1 ARID4B MAX DMAP1 ZNF644 ZNF2 RN7SL255P RNU1-140P
GH05H104180 0.8 ENCODE 0.2 +80.2 80201 0 HDGF CTCF PKNOX1 ATF1 RB1 ARID4B MAX DMAP1 ZNF644 ZNF2 RNU1-140P RN7SL255P
GH05H104186 0.7 ENCODE 0.2 +87.4 87411 0 ZBTB7B YY1 CBX5 ZNF547 NFE2 TRIM24 NFE2L2 HLF MAFG CEBPB RN7SL255P RNU1-140P
GH05H104129 0.3 FANTOM5 0.3 +30.8 30842 0 RNU1-140P RN7SL255P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU1-140P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-140P Gene

Chromosome:
5
Start:
104,098,874 bp from pter
End:
104,099,038 bp from pter
Size:
165 bases
Orientation:
Plus strand

Genomic View for RNU1-140P Gene

Genes around RNU1-140P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-140P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-140P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-140P Gene

Proteins for RNU1-140P Gene

Post-translational modifications for RNU1-140P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-140P Gene

Domains & Families for RNU1-140P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-140P Gene

Function for RNU1-140P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-140P Gene

Localization for RNU1-140P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-140P Gene

Pathways & Interactions for RNU1-140P Gene

SuperPathways for RNU1-140P Gene

No Data Available

Interacting Proteins for RNU1-140P Gene

Gene Ontology (GO) - Biological Process for RNU1-140P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-140P Gene

Drugs & Compounds for RNU1-140P Gene

No Compound Related Data Available

Transcripts for RNU1-140P Gene

mRNA/cDNA for RNU1-140P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-140P Gene

No ASD Table

Relevant External Links for RNU1-140P Gene

GeneLoc Exon Structure for
RNU1-140P
ECgene alternative splicing isoforms for
RNU1-140P

Expression for RNU1-140P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-140P Gene

genes like me logo Genes that share expression patterns with RNU1-140P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-140P Gene

Orthologs for RNU1-140P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-140P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25728 34
  • 67 (a)
ManyToMany
Gm22283 34
  • 66 (a)
ManyToMany
Gm25481 34
  • 66 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 34
  • 66 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U1 34
  • 60 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U1 34
  • 45 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U1 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 59 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U1 34
  • 63 (a)
OneToMany
Species where no ortholog for RNU1-140P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU1-140P Gene

ENSEMBL:
Gene Tree for RNU1-140P (if available)
TreeFam:
Gene Tree for RNU1-140P (if available)

Paralogs for RNU1-140P Gene

No data available for Paralogs for RNU1-140P Gene

Variants for RNU1-140P Gene

Relevant External Links for RNU1-140P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-140P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-140P Gene

Disorders for RNU1-140P Gene

No disorders were found for RNU1-140P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-140P Gene

Publications for RNU1-140P Gene

No publications were found for RNU1-140P Gene.

Products for RNU1-140P Gene

Sources for RNU1-140P Gene

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