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Aliases for RNU1-13P Gene

Subcategory (RNA class) for RNU1-13P Gene

snRNA

Aliases for RNU1-13P Gene

  • RNA, U1 Small Nuclear 13, Pseudogene 2 3
  • RNA, U1 Small Nuclear Pseudogene 6 2 3
  • RNA, Variant U1 Small Nuclear 2 3
  • RNU1-71 3
  • RNVU1-2 3
  • RNU1P6 3
  • VU1.2 3
  • U1.1 3
  • U1P1 3

External Ids for RNU1-13P Gene

ORGUL Members for RNU1-13P Gene

Previous Symbols for RNU1-13P Gene

  • RNU1P6

Summaries for RNU1-13P Gene

GeneCards Summary for RNU1-13P Gene

RNU1-13P (RNA, U1 Small Nuclear 13, Pseudogene) is a Pseudogene, and belongs to snRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-13P Gene

Genomics for RNU1-13P Gene

Genomic Location for RNU1-13P Gene

Start:
148,388,490 bp from pter
End:
148,388,651 bp from pter
Size:
162 bases
Orientation:
Minus strand

Genomic View for RNU1-13P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU1-13P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-13P Gene

No data available for Regulatory Elements for RNU1-13P Gene

Proteins for RNU1-13P Gene

Post-translational modifications for RNU1-13P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-13P Gene

Domains for RNU1-13P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNU1-13P Gene

Function for RNU1-13P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU1-13P Gene

Localization for RNU1-13P Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU1-13P Gene

Pathways for RNU1-13P Gene

SuperPathways for RNU1-13P Gene

No Data Available

Interacting Proteins for RNU1-13P Gene

Gene Ontology (GO) - Biological Process for RNU1-13P Gene

None

No data available for Pathways by source for RNU1-13P Gene

Transcripts for RNU1-13P Gene

mRNA/cDNA for RNU1-13P Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-13P Gene

No ASD Table

Relevant External Links for RNU1-13P Gene

GeneLoc Exon Structure for
RNU1-13P
ECgene alternative splicing isoforms for
RNU1-13P

Expression for RNU1-13P Gene

mRNA expression in normal human tissues for RNU1-13P Gene

genes like me logo Genes that share expressions with RNU1-13P: view

Orthologs for RNU1-13P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-13P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 37
  • 92 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 37
  • 93 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U1 37
  • 91 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23330 37
  • 90 (a)
OneToMany
Species with no ortholog for RNU1-13P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-13P Gene

ENSEMBL:
Gene Tree for RNU1-13P (if available)
TreeFam:
Gene Tree for RNU1-13P (if available)

Paralogs for RNU1-13P Gene

No data available for Paralogs for RNU1-13P Gene

Variants for RNU1-13P Gene

Sequence variations from dbSNP and Humsavar for RNU1-13P Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2932501 -- 148,389,037(-) ACAAG(A/G)TAGGC upstream-variant-2KB
rs3009453 -- 148,390,123(-) tgagt(C/T)agcaa upstream-variant-2KB
rs3009454 -- 148,390,087(-) aagca(A/G)aaagt upstream-variant-2KB
rs3009455 -- 148,389,167(-) TACAT(C/T)ACAAG upstream-variant-2KB
rs3009456 -- 148,388,869(+) GGATA(C/G)GGCGA upstream-variant-2KB

Relevant External Links for RNU1-13P Gene

HapMap Linkage Disequilibrium report
RNU1-13P

No data available for Structural Variations from Database of Genomic Variants (DGV) for RNU1-13P Gene

Disorders for RNU1-13P Gene

No disorders were found for RNU1-13P Gene.

No data available for UniProtKB/Swiss-Prot for RNU1-13P Gene

Publications for RNU1-13P Gene

  1. Human U1 RNA pseudogenes may be generated by both DNA- and RNA-mediated mechanisms. (PMID: 6085956) Denison R.A. … Weiner A.M. (Mol. Cell. Biol. 1982) 2 3
  2. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 3

Products for RNU1-13P Gene

Sources for RNU1-13P Gene

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