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Aliases for RNU1-13P Gene

Subcategory (RNA class) for RNU1-13P Gene

snRNA

Aliases for RNU1-13P Gene

  • RNA, U1 Small Nuclear 13, Pseudogene 2 3 5
  • RNA, U1 Small Nuclear Pseudogene 6 2 3
  • RNA, Variant U1 Small Nuclear 2 3
  • RNU1-71 3
  • RNVU1-2 3
  • RNU1P6 3
  • VU1.2 3
  • U1.1 3
  • U1P1 3

External Ids for RNU1-13P Gene

ORGUL Members for RNU1-13P Gene

Previous HGNC Symbols for RNU1-13P Gene

  • RNU1P6

Previous GeneCards Identifiers for RNU1-13P Gene

  • GC01M142465
  • GC01M143674
  • GC01M118999

Summaries for RNU1-13P Gene

GeneCards Summary for RNU1-13P Gene

RNU1-13P (RNA, U1 Small Nuclear 13, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-13P Gene

Genomics for RNU1-13P Gene

Regulatory Elements for RNU1-13P Gene


Promoters for RNU1-13P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNU1-13P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-13P Gene

Chromosome:
1
Start:
148,388,490 bp from pter
End:
148,388,651 bp from pter
Size:
162 bases
Orientation:
Minus strand

Genomic View for RNU1-13P Gene

Genes around RNU1-13P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-13P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-13P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-13P Gene

Proteins for RNU1-13P Gene

Post-translational modifications for RNU1-13P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-13P Gene

Domains & Families for RNU1-13P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-13P Gene

Function for RNU1-13P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-13P Gene

Localization for RNU1-13P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU1-13P Gene

Pathways & Interactions for RNU1-13P Gene

SuperPathways for RNU1-13P Gene

No Data Available

Interacting Proteins for RNU1-13P Gene

Gene Ontology (GO) - Biological Process for RNU1-13P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-13P Gene

Drugs & Compounds for RNU1-13P Gene

No Compound Related Data Available

Transcripts for RNU1-13P Gene

mRNA/cDNA for RNU1-13P Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-13P Gene

No ASD Table

Relevant External Links for RNU1-13P Gene

GeneLoc Exon Structure for
RNU1-13P
ECgene alternative splicing isoforms for
RNU1-13P

Expression for RNU1-13P Gene

mRNA expression in normal human tissues for RNU1-13P Gene

genes like me logo Genes that share expression patterns with RNU1-13P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU1-13P Gene

Orthologs for RNU1-13P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-13P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U1 35
  • 93 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U1 35
  • 91 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23330 35
  • 90 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia U1 35
  • 92 (a)
ManyToMany
Species where no ortholog for RNU1-13P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-13P Gene

ENSEMBL:
Gene Tree for RNU1-13P (if available)
TreeFam:
Gene Tree for RNU1-13P (if available)

Paralogs for RNU1-13P Gene

No data available for Paralogs for RNU1-13P Gene

Variants for RNU1-13P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU1-13P Gene

Variant ID Type Subtype PubMed ID
dgv187n106 CNV deletion 24896259
dgv327n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
dgv68e199 CNV deletion 23128226
esv2667036 CNV deletion 23128226
esv2677125 CNV deletion 23128226
esv2761299 CNV gain+loss 21179565
esv27827 CNV gain 19812545
esv3572675 CNV gain 25503493
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1078224 CNV deletion 25765185
nsv1132304 CNV duplication 24896259
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv510984 OTHER inversion 20534489
nsv547650 CNV loss 21841781
nsv831448 CNV loss 17160897
nsv946218 CNV duplication 23825009
nsv946327 CNV duplication 23825009
nsv951837 CNV deletion 24416366

Relevant External Links for RNU1-13P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-13P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU1-13P Gene

Disorders for RNU1-13P Gene

Relevant External Links for RNU1-13P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNU1-13P

No disorders were found for RNU1-13P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU1-13P Gene

Publications for RNU1-13P Gene

  1. Human U1 RNA pseudogenes may be generated by both DNA- and RNA-mediated mechanisms. (PMID: 6085956) Denison R.A. … Weiner A.M. (Mol. Cell. Biol. 1982) 2 3 65
  2. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D. … Murphy S. (Genome Res. 2013) 3 65

Products for RNU1-13P Gene

Sources for RNU1-13P Gene

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