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Aliases for RNU1-133P Gene

Subcategory (RNA class) for RNU1-133P Gene

snRNA

Aliases for RNU1-133P Gene

  • RNA, U1 Small Nuclear 133, Pseudogene 2 3 5

External Ids for RNU1-133P Gene

ORGUL Members for RNU1-133P Gene

Previous GeneCards Identifiers for RNU1-133P Gene

  • GC02P201645
  • GC00U934606

Summaries for RNU1-133P Gene

GeneCards Summary for RNU1-133P Gene

RNU1-133P (RNA, U1 Small Nuclear 133, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-133P Gene

Genomics for RNU1-133P Gene

Regulatory Elements for RNU1-133P Gene

Enhancers for RNU1-133P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F200745 1.3 Ensembl ENCODE 12.4 -28.0 -27998 3.4 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF121 FOS ZNF263 SP5 RNU1-133P AOX1 PPIL3 ALS2CR12 LINC01792 GC02P200777
GH02F200740 1.1 Ensembl ENCODE 12.3 -33.6 -33647 2.4 ELF3 ARID4B ZNF48 ZSCAN9 RARA CREM THAP11 MXD4 PPARG KAT8 RNU1-133P ALS2CR12 LINC01792 GC02P200777
GH02F200736 0.6 ENCODE 11.8 -38.6 -38606 1.5 OSR2 GFI1B TEAD4 FOS ZXDB TRIM28 RNU1-133P BZW1 LOC101927795 AOX1 LINC01792 GC02P200777
GH02F200778 1 Ensembl 0.8 +2.7 2717 0.6 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ZNF143 ZNF207 FOS BICD1P1 BZW1 RNU1-133P GC02P200785
GH02F200780 1 Ensembl ENCODE 0.4 +6.7 6686 3.8 STAT1 JUN CEBPB EP300 BRCA1 RFX5 JUND GATA3 SMC3 STAT3 PPIL3 LOC101927795 BZW1 BICD1P1 GC02P200785 RNU1-133P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU1-133P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-133P Gene

Chromosome:
2
Start:
200,775,584 bp from pter
End:
200,775,750 bp from pter
Size:
167 bases
Orientation:
Plus strand

Genomic View for RNU1-133P Gene

Genes around RNU1-133P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-133P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-133P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-133P Gene

Proteins for RNU1-133P Gene

Post-translational modifications for RNU1-133P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-133P Gene

Domains & Families for RNU1-133P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-133P Gene

Function for RNU1-133P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-133P Gene

Localization for RNU1-133P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU1-133P Gene

Pathways & Interactions for RNU1-133P Gene

SuperPathways for RNU1-133P Gene

No Data Available

Interacting Proteins for RNU1-133P Gene

Gene Ontology (GO) - Biological Process for RNU1-133P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-133P Gene

Transcripts for RNU1-133P Gene

mRNA/cDNA for RNU1-133P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-133P Gene

No ASD Table

Relevant External Links for RNU1-133P Gene

GeneLoc Exon Structure for
RNU1-133P
ECgene alternative splicing isoforms for
RNU1-133P

Expression for RNU1-133P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-133P Gene

genes like me logo Genes that share expression patterns with RNU1-133P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU1-133P Gene

Orthologs for RNU1-133P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-133P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 35
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24200 35
  • 75 (a)
OneToMany
Gm25914 35
  • 69 (a)
OneToMany
Gm24671 35
  • 66 (a)
OneToMany
Gm25421 35
  • 66 (a)
OneToMany
Gm22891 35
  • 65 (a)
OneToMany
Gm25489 35
  • 65 (a)
OneToMany
Gm26290 35
  • 65 (a)
OneToMany
Gm23000 35
  • 64 (a)
OneToMany
Gm24725 35
  • 64 (a)
OneToMany
Gm24959 35
  • 64 (a)
OneToMany
Gm22507 35
  • 62 (a)
OneToMany
Gm25699 35
  • 62 (a)
OneToMany
Gm22082 35
  • 61 (a)
OneToMany
Gm23050 35
  • 60 (a)
OneToMany
Gm24692 35
  • 60 (a)
OneToMany
Gm25730 35
  • 59 (a)
OneToMany
Gm26057 35
  • 59 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U1 35
  • 67 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U1 35
  • 65 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U1 35
  • 59 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U1 35
  • 45 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U1 35
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U1 35
  • 64 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii U1 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35
  • 56 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U1 35
  • 55 (a)
OneToMany
Species where no ortholog for RNU1-133P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU1-133P Gene

ENSEMBL:
Gene Tree for RNU1-133P (if available)
TreeFam:
Gene Tree for RNU1-133P (if available)

Paralogs for RNU1-133P Gene

No data available for Paralogs for RNU1-133P Gene

Variants for RNU1-133P Gene

Relevant External Links for RNU1-133P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-133P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-133P Gene

Disorders for RNU1-133P Gene

No disorders were found for RNU1-133P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-133P Gene

Publications for RNU1-133P Gene

No publications were found for RNU1-133P Gene.

Products for RNU1-133P Gene

Sources for RNU1-133P Gene

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