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Aliases for RNU1-125P Gene

Subcategory (RNA class) for RNU1-125P Gene

snRNA

Aliases for RNU1-125P Gene

  • RNA, U1 Small Nuclear 125, Pseudogene 2 3 5

External Ids for RNU1-125P Gene

ORGUL Members for RNU1-125P Gene

Previous GeneCards Identifiers for RNU1-125P Gene

  • GC16P003142
  • GC00U935241
  • GC16P003166
  • GC16P003204
  • GC16P003224
  • GC16P003278
  • GC16P003307
  • GC16P003374
  • GC16P003411

Summaries for RNU1-125P Gene

GeneCards Summary for RNU1-125P Gene

RNU1-125P (RNA, U1 Small Nuclear 125, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-125P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-125P Gene

Genomics for RNU1-125P Gene

GeneHancer (GH) Regulatory Elements for RNU1-125P Gene

Promoters and enhancers for RNU1-125P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I003128 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 12.4 +60.0 60043 1.8 PKNOX1 ATF1 ARID4B SIN3A ZNF2 YY1 E2F8 ARID2 ZNF143 ATF7 PIR58259 ZNF213 GC16M003129 RNU1-125P IL32 MMP25 BICDL2 LOC100128770 CLDN6 HCFC1R1
GH16I003095 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.8 +26.6 26622 1.3 BCOR CTCF ZBTB6 ZMYM3 RAD21 RELA ZKSCAN1 POLR2A VEZF1 ZNF143 THOC6 ZNF213-AS1 SRRM2 CREBBP RNU1-125P IL32 MMP25 BICDL2 LOC100128770 HCFC1R1
GH16I003094 Enhancer 0.6 ENCODE 12.8 +25.2 25242 0.2 CTCF ZNF654 L3MBTL2 TRIM22 REST RAD21 KLF16 ZNF143 ZBTB33 RNU1-125P IL32 MMP25 BICDL2 LOC100128770 HCFC1R1 CLDN6 THOC6 TNFRSF12A ZSCAN10
GH16I003063 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -3.5 -3466 5.8 HDGF PKNOX1 MLX ARID4B DMAP1 IRF4 ZNF48 ETS1 YY1 GLIS2 IL32 MMP25 LOC105371058 E4F1 ZNF75A BICDL2 ZSCAN10 LOC100128770 LOC107984895 ENSG00000260447
GH16I003069 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.8 +4.9 4857 9.8 HDGF PKNOX1 YBX1 IRF4 ZNF207 ZNF143 ATF7 RUNX3 PAF1 ATF4 GC16P003518 ZNF205 LOC105371058 MMP25 IL32 FLYWCH2 BICDL2 LOC100128770 CLDN6 HCFC1R1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU1-125P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-125P Gene

Genomic Locations for RNU1-125P Gene
chr16:3,069,523-3,069,651
(GRCh38/hg38)
Size:
129 bases
Orientation:
Plus strand

Genomic View for RNU1-125P Gene

Genes around RNU1-125P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-125P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-125P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-125P Gene

Proteins for RNU1-125P Gene

Post-translational modifications for RNU1-125P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-125P Gene

Domains & Families for RNU1-125P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-125P Gene

Function for RNU1-125P Gene

Phenotypes From GWAS Catalog for RNU1-125P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-125P Gene

Localization for RNU1-125P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-125P Gene

Pathways & Interactions for RNU1-125P Gene

SuperPathways for RNU1-125P Gene

No Data Available

Interacting Proteins for RNU1-125P Gene

Gene Ontology (GO) - Biological Process for RNU1-125P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-125P Gene

Drugs & Compounds for RNU1-125P Gene

No Compound Related Data Available

Transcripts for RNU1-125P Gene

mRNA/cDNA for RNU1-125P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-125P Gene

No ASD Table

Relevant External Links for RNU1-125P Gene

GeneLoc Exon Structure for
RNU1-125P
ECgene alternative splicing isoforms for
RNU1-125P

Expression for RNU1-125P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-125P Gene

genes like me logo Genes that share expression patterns with RNU1-125P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-125P Gene

Orthologs for RNU1-125P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-125P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U1 34
  • 46 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 34
  • 45 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24291 34
  • 43 (a)
OneToMany
chicken
(Gallus gallus)
Aves U1 34
  • 46 (a)
OneToMany
Species where no ortholog for RNU1-125P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-125P Gene

ENSEMBL:
Gene Tree for RNU1-125P (if available)
TreeFam:
Gene Tree for RNU1-125P (if available)

Paralogs for RNU1-125P Gene

No data available for Paralogs for RNU1-125P Gene

Variants for RNU1-125P Gene

Additional Variant Information for RNU1-125P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-125P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-125P Gene

Disorders for RNU1-125P Gene

No disorders were found for RNU1-125P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-125P Gene

Publications for RNU1-125P Gene

No publications were found for RNU1-125P Gene.

Products for RNU1-125P Gene

Sources for RNU1-125P Gene

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