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Aliases for RNU1-115P Gene

Subcategory (RNA class) for RNU1-115P Gene

snRNA

Aliases for RNU1-115P Gene

  • RNA, U1 Small Nuclear 115, Pseudogene 2 3 5

External Ids for RNU1-115P Gene

ORGUL Members for RNU1-115P Gene

Previous GeneCards Identifiers for RNU1-115P Gene

  • GC0XM132374
  • GC00U935336

Summaries for RNU1-115P Gene

GeneCards Summary for RNU1-115P Gene

RNU1-115P (RNA, U1 Small Nuclear 115, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU1-115P Gene

  • U1 spliceosomal RNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU1-115P Gene

Genomics for RNU1-115P Gene

Regulatory Elements for RNU1-115P Gene

Enhancers for RNU1-115P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF133229 0.7 ENCODE 0.4 +9.2 9239 0.1 PKNOX1 JUN TSHZ1 ZEB1 JUND GATA3 ZNF366 MTA1 FOSL2 FOS PIR41819 GC0XM133239 RNU1-115P
GH0XF133250 0.6 ENCODE 0.4 -11.9 -11893 0.6 FOXA3 CEBPA CEBPB CEBPG BCL6 ZNF644 TEAD3 GC0XM133239 RNU1-115P GPC4
GH0XF133264 0.4 ENCODE 0.3 -26.6 -26630 1.2 TEAD4 CTBP2 GPC4 GC0XM133239 RNU1-115P
GH0XF133259 0.3 FANTOM5 0.3 -21.1 -21116 0.2 USP26 GC0XM133239 RNU1-115P GPC4
GH0XF133411 0.9 ENCODE 0.1 -175.4 -175393 4.7 PKNOX1 ZNF2 GLIS2 SCRT2 SP3 ZEB2 ZNF610 ZNF341 GLIS1 ZNF24 GPC4 GC0XM133239 RNU1-115P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU1-115P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-115P Gene

Chromosome:
X
Start:
133,238,657 bp from pter
End:
133,238,816 bp from pter
Size:
160 bases
Orientation:
Minus strand

Genomic View for RNU1-115P Gene

Genes around RNU1-115P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-115P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-115P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-115P Gene

Proteins for RNU1-115P Gene

Post-translational modifications for RNU1-115P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-115P Gene

Domains & Families for RNU1-115P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-115P Gene

Function for RNU1-115P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-115P Gene

Localization for RNU1-115P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU1-115P Gene

Pathways & Interactions for RNU1-115P Gene

SuperPathways for RNU1-115P Gene

No Data Available

Interacting Proteins for RNU1-115P Gene

Gene Ontology (GO) - Biological Process for RNU1-115P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-115P Gene

Transcripts for RNU1-115P Gene

mRNA/cDNA for RNU1-115P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-115P Gene

No ASD Table

Relevant External Links for RNU1-115P Gene

GeneLoc Exon Structure for
RNU1-115P
ECgene alternative splicing isoforms for
RNU1-115P

Expression for RNU1-115P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-115P Gene

genes like me logo Genes that share expression patterns with RNU1-115P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU1-115P Gene

Orthologs for RNU1-115P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-115P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 35
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U1 35
  • 71 (a)
OneToOne
Species where no ortholog for RNU1-115P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-115P Gene

ENSEMBL:
Gene Tree for RNU1-115P (if available)
TreeFam:
Gene Tree for RNU1-115P (if available)

Paralogs for RNU1-115P Gene

No data available for Paralogs for RNU1-115P Gene

Variants for RNU1-115P Gene

Relevant External Links for RNU1-115P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-115P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-115P Gene

Disorders for RNU1-115P Gene

No disorders were found for RNU1-115P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-115P Gene

Publications for RNU1-115P Gene

No publications were found for RNU1-115P Gene.

Products for RNU1-115P Gene

Sources for RNU1-115P Gene

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