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Aliases for RNU1-109P Gene

Subcategory (RNA class) for RNU1-109P Gene

snRNA

Aliases for RNU1-109P Gene

  • RNA, U1 Small Nuclear 109, Pseudogene 2 3 5

External Ids for RNU1-109P Gene

ORGUL Members for RNU1-109P Gene

Previous GeneCards Identifiers for RNU1-109P Gene

  • GC00U934814

Summaries for RNU1-109P Gene

GeneCards Summary for RNU1-109P Gene

RNU1-109P (RNA, U1 Small Nuclear 109, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-109P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-109P Gene

Genomics for RNU1-109P Gene

Regulatory Elements for RNU1-109P Gene

Enhancers for RNU1-109P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18H000829 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -32.4 -32350 1 HDGF PKNOX1 FOXA2 ATF1 ARNT TCF12 ZNF121 ZNF766 ZNF143 ATF7 THOC1 RNU1-109P BOLA2P1 ENSG00000273355
GH18H000708 1.7 FANTOM5 ENCODE dbSUPER 11.1 +87.1 87108 4 FOXA2 PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 CBX5 ZNF143 SP5 ENOSF1 THOC1 TYMS TYMSOS RNU1-109P YES1 ENSG00000265490
GH18H000831 1.5 Ensembl ENCODE dbSUPER 11.6 -34.1 -34113 1 PKNOX1 ATF1 MLX ARID4B DMAP1 TCF12 GLIS2 GATA2 ATF7 SP5 RNU1-109P GC18P000835 GC18M000847
GH18H000698 1.5 Ensembl ENCODE dbSUPER 10.5 +95.9 95897 6 PKNOX1 FOXA2 MLX ARID4B FEZF1 ZNF2 FOS ATF7 SP3 REST ENOSF1 TYMS TYMSOS RNU1-109P THOC1 ENSG00000265490 GC18M000704 PIR56960
GH18H000679 1.3 FANTOM5 ENCODE dbSUPER 10.5 +114.8 114779 7 SOX13 PKNOX1 FOXA2 ZNF384 ZIC2 ZFHX2 LCORL POLR2A RERE NR2F6 ENOSF1 TYMS TYMSOS CLUL1 RNU1-109P ENSG00000265490 PIR56960 GC18M000704
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU1-109P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-109P Gene

Chromosome:
18
Start:
797,989 bp from pter
End:
798,135 bp from pter
Size:
147 bases
Orientation:
Minus strand

Genomic View for RNU1-109P Gene

Genes around RNU1-109P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-109P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-109P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-109P Gene

Proteins for RNU1-109P Gene

Post-translational modifications for RNU1-109P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-109P Gene

Domains & Families for RNU1-109P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-109P Gene

Function for RNU1-109P Gene

Phenotypes From GWAS Catalog for RNU1-109P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-109P Gene

Localization for RNU1-109P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-109P Gene

Pathways & Interactions for RNU1-109P Gene

SuperPathways for RNU1-109P Gene

No Data Available

Interacting Proteins for RNU1-109P Gene

Gene Ontology (GO) - Biological Process for RNU1-109P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-109P Gene

Drugs & Compounds for RNU1-109P Gene

No Compound Related Data Available

Transcripts for RNU1-109P Gene

mRNA/cDNA for RNU1-109P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-109P Gene

No ASD Table

Relevant External Links for RNU1-109P Gene

GeneLoc Exon Structure for
RNU1-109P
ECgene alternative splicing isoforms for
RNU1-109P

Expression for RNU1-109P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-109P Gene

genes like me logo Genes that share expression patterns with RNU1-109P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-109P Gene

Orthologs for RNU1-109P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-109P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24626 34
  • 68 (a)
ManyToMany
Gm25949 34
  • 56 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 34
  • 67 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 34
  • 63 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U1 34
  • 58 (a)
ManyToMany
Species where no ortholog for RNU1-109P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-109P Gene

ENSEMBL:
Gene Tree for RNU1-109P (if available)
TreeFam:
Gene Tree for RNU1-109P (if available)

Paralogs for RNU1-109P Gene

No data available for Paralogs for RNU1-109P Gene

Variants for RNU1-109P Gene

Relevant External Links for RNU1-109P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-109P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-109P Gene

Disorders for RNU1-109P Gene

No disorders were found for RNU1-109P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-109P Gene

Publications for RNU1-109P Gene

No publications were found for RNU1-109P Gene.

Products for RNU1-109P Gene

Sources for RNU1-109P Gene

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