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Aliases for RNU1-106P Gene

Subcategory (RNA class) for RNU1-106P Gene

snRNA

Aliases for RNU1-106P Gene

  • RNA, U1 Small Nuclear 106, Pseudogene 2 3 5

External Ids for RNU1-106P Gene

ORGUL Members for RNU1-106P Gene

Previous GeneCards Identifiers for RNU1-106P Gene

  • GC08P129013
  • GC00U935106

Summaries for RNU1-106P Gene

GeneCards Summary for RNU1-106P Gene

RNU1-106P (RNA, U1 Small Nuclear 106, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-106P Gene

Genomics for RNU1-106P Gene

Regulatory Elements for RNU1-106P Gene

Enhancers for RNU1-106P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F127972 1.8 FANTOM5 Ensembl ENCODE 16.7 -21.4 -21370 9.5 HDAC1 PKNOX1 CBX3 TBL1XR1 ZFP64 GATA2 ZNF143 ETV6 SMARCA5 CEBPB PVT1 RNU1-106P TMEM75 RNU4-25P MIR1207 MIR1204 CASC11 MYC GC08P127985 MIR1205
GH08F128013 0.9 Ensembl ENCODE 15.5 +16.3 16299 3.6 TBP WRNIP1 ZFP64 RAD21 GATA2 EGR1 ETV6 FOS CREM EGR2 RNU1-106P SRRM1P1 MIR1207 TMEM75 MIR1204 PVT1 RNU4-25P
GH08F128032 1.4 FANTOM5 Ensembl ENCODE 11.4 +35.3 35302 3.5 PKNOX1 SIN3A ELK1 FOS REST ZNF592 SREBF1 MBD2 MEF2D SMARCA4 RNU4-25P RNU1-106P TMEM75 MIR1208 MIR1207
GH08F127863 1.6 FANTOM5 Ensembl ENCODE 11.4 -130.8 -130800 10.2 HDGF PKNOX1 ATF1 ZFP64 SIN3A YBX1 ETS1 YY1 ELK1 ZNF207 SRRM1P1 RNU1-106P MIR1204 PVT1 CASC11 MYC TMEM75 RNU4-25P ENSG00000278324 GC08P127796
GH08F127857 1.5 FANTOM5 Ensembl ENCODE 11.4 -139.2 -139194 4.4 HDGF ATF1 PKNOX1 ARNT ZFP64 ZNF493 SIN3A ZNF121 ZNF207 FOS SRRM1P1 RNU1-106P ENSG00000278324 GC08P127796
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU1-106P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-106P Gene

Chromosome:
8
Start:
127,999,131 bp from pter
End:
127,999,294 bp from pter
Size:
164 bases
Orientation:
Plus strand

Genomic View for RNU1-106P Gene

Genes around RNU1-106P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-106P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-106P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-106P Gene

Proteins for RNU1-106P Gene

Post-translational modifications for RNU1-106P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-106P Gene

Domains & Families for RNU1-106P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-106P Gene

Function for RNU1-106P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-106P Gene

Localization for RNU1-106P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU1-106P Gene

Pathways & Interactions for RNU1-106P Gene

SuperPathways for RNU1-106P Gene

No Data Available

Interacting Proteins for RNU1-106P Gene

Gene Ontology (GO) - Biological Process for RNU1-106P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-106P Gene

Transcripts for RNU1-106P Gene

mRNA/cDNA for RNU1-106P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-106P Gene

No ASD Table

Relevant External Links for RNU1-106P Gene

GeneLoc Exon Structure for
RNU1-106P
ECgene alternative splicing isoforms for
RNU1-106P

Expression for RNU1-106P Gene

mRNA expression in normal human tissues for RNU1-106P Gene

genes like me logo Genes that share expression patterns with RNU1-106P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU1-106P Gene

Orthologs for RNU1-106P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-106P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 35
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U1 35
  • 89 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 35
  • 69 (a)
OneToOne
Species where no ortholog for RNU1-106P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-106P Gene

ENSEMBL:
Gene Tree for RNU1-106P (if available)
TreeFam:
Gene Tree for RNU1-106P (if available)

Paralogs for RNU1-106P Gene

No data available for Paralogs for RNU1-106P Gene

Variants for RNU1-106P Gene

Relevant External Links for RNU1-106P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-106P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-106P Gene

Disorders for RNU1-106P Gene

No disorders were found for RNU1-106P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-106P Gene

Publications for RNU1-106P Gene

No publications were found for RNU1-106P Gene.

Products for RNU1-106P Gene

Sources for RNU1-106P Gene

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