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Aliases for RNU1-1 Gene

Subcategory (RNA class) for RNU1-1 Gene


Quality Score for this RNA gene is


Aliases for RNU1-1 Gene

  • RNA, U1 Small Nuclear 1 2 3 5
  • RNA, U1G4 Small Nuclear 2 3
  • RNA, U1A3 Small Nuclear 2 3
  • RNA, U1A Small Nuclear 2 3
  • Rnu1a1 3
  • RNU1A3 3
  • RNU1G4 3
  • HU1-1 3
  • RNU1A 3
  • HSD1 3
  • U1A1 3
  • RNU1 3
  • U1 3

External Ids for RNU1-1 Gene

ORGUL Members for RNU1-1 Gene

Previous HGNC Symbols for RNU1-1 Gene

  • RNU1
  • RNU1G4
  • RNU1A3
  • RNU1A

Previous GeneCards Identifiers for RNU1-1 Gene

  • GC01U902388
  • GC01M016841

Summaries for RNU1-1 Gene

GeneCards Summary for RNU1-1 Gene

RNU1-1 (RNA, U1 Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class. Among its related pathways are Spliceosomal Splicing Cycle.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-1 Gene

Genomics for RNU1-1 Gene

Regulatory Elements for RNU1-1 Gene

Enhancers for RNU1-1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNU1-1 on UCSC Golden Path with GeneCards custom track

Promoters for RNU1-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNU1-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU1-1 Gene

16,514,122 bp from pter
16,514,285 bp from pter
164 bases
Minus strand

Genomic View for RNU1-1 Gene

Genes around RNU1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-1 Gene

Proteins for RNU1-1 Gene

Post-translational modifications for RNU1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-1 Gene

Domains & Families for RNU1-1 Gene

Gene Families for RNU1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-1 Gene

Function for RNU1-1 Gene

miRNA for RNU1-1 Gene

miRTarBase miRNAs that target RNU1-1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNU1-1 Gene

Localization for RNU1-1 Gene

Subcellular locations from

Jensen Localization Image for RNU1-1 Gene COMPARTMENTS Subcellular localization image for RNU1-1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RNU1-1 Gene

Pathways & Interactions for RNU1-1 Gene

SuperPathways for RNU1-1 Gene

Superpath Contained pathways
1 Spliceosomal Splicing Cycle
genes like me logo Genes that share pathways with RNU1-1: view

Pathways by source for RNU1-1 Gene

1 Qiagen pathway for RNU1-1 Gene

Interacting Proteins for RNU1-1 Gene

Gene Ontology (GO) - Biological Process for RNU1-1 Gene


No data available for SIGNOR curated interactions for RNU1-1 Gene

Drugs & Compounds for RNU1-1 Gene

No Compound Related Data Available

Transcripts for RNU1-1 Gene

mRNA/cDNA for RNU1-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-1 Gene

No ASD Table

Relevant External Links for RNU1-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU1-1 Gene

mRNA expression in normal human tissues for RNU1-1 Gene

genes like me logo Genes that share expression patterns with RNU1-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNU1-1 Gene

Orthologs for RNU1-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia U1 36
  • 100 (a)
(Canis familiaris)
Mammalia U1 36
  • 100 (a)
(Pan troglodytes)
Mammalia U1 36
  • 100 (a)
Species with no ortholog for RNU1-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-1 Gene

Gene Tree for RNU1-1 (if available)
Gene Tree for RNU1-1 (if available)

Paralogs for RNU1-1 Gene

No data available for Paralogs for RNU1-1 Gene

Variants for RNU1-1 Gene

Sequence variations from dbSNP and Humsavar for RNU1-1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs156901 -- 16,513,967(-) AAAAA(A/G)CGAGC downstream-variant-500B
rs157253 -- 16,514,091(+) CTTGG(C/T)GTACA downstream-variant-500B
rs894372 -- 16,514,072(+) TACAA(A/G)AAAAG downstream-variant-500B
rs1853529 -- 16,513,983(+) ATGGC(A/G)TGCAG downstream-variant-500B
rs1853530 -- 16,513,991(+) CAGGC(C/G)ACATG downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for RNU1-1 Gene

Disorders for RNU1-1 Gene

No disorders were found for RNU1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-1 Gene

Publications for RNU1-1 Gene

  1. Complex role of the beta 2-beta 3 loop in the interaction of U1A with U1 hairpin II RNA. (PMID: 12082087) Katsamba P.S. … Laird-Offringa I.A. (J. Biol. Chem. 2002) 2 3 67
  2. U1 small nuclear RNA variants differentially form ribonucleoprotein particles in vitro. (PMID: 24583175) Somarelli J.A. … Herrera R.J. (Gene 2014) 3
  3. Implication of the SMN complex in the biogenesis and steady state level of the signal recognition particle. (PMID: 23221635) Piazzon N. … Massenet S. (Nucleic Acids Res. 2013) 3
  4. U1 snRNP determines mRNA length and regulates isoform expression. (PMID: 22770214) Berg M.G. … Dreyfuss G. (Cell 2012) 3
  5. U1 snRNA directly interacts with polypyrimidine tract-binding protein during splicing repression. (PMID: 21362553) Sharma S. … Black D.L. (Mol. Cell 2011) 3

Products for RNU1-1 Gene

Sources for RNU1-1 Gene