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Aliases for RNR3 Gene

Subcategory (RNA class) for RNR3 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for RNR3 Gene

  • RNA, Ribosomal 45S Cluster 3 2 3
  • RNA, Ribosomal Cluster 3 2
  • 45S RDNA Cluster 3 2
  • RNA, Ribosomal 3 2

External Ids for RNR3 Gene

Summaries for RNR3 Gene

Entrez Gene Summary for RNR3 Gene

  • 45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. Gene and RefSeq, in collaboration with HGNC, currently describe one 45S rDNA cluster, and one set of 45S precursor and product rRNAs, for each of the five human chromosomes to which these loci are localized. This gene represents the 45S ribosomal DNA cluster on chromosome 15. [provided by RefSeq, Feb 2017]

GeneCards Summary for RNR3 Gene

RNR3 (RNA, Ribosomal 45S Cluster 3) is an RNA Gene, and is affiliated with the non-coding RNA class. Among its related pathways are Viral mRNA Translation.

Gene Wiki entry for RNR3 Gene

Additional gene information for RNR3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNR3 Gene

Genomics for RNR3 Gene

Genomic Location for RNR3 Gene

Chromosome:
15
Orientation:
Unknown strand

Genomic View for RNR3 Gene


Cytogenetic band:
GeneLoc Logo Gene Density

No data available for Regulatory Elements and RefSeq DNA sequence for RNR3 Gene

Proteins for RNR3 Gene

Post-translational modifications for RNR3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNR3 Gene

Domains & Families for RNR3 Gene

Gene Families for RNR3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNR3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNR3 Gene

Function for RNR3 Gene

Molecular function for RNR3 Gene

GENATLAS Biochemistry:
RNA,ribosomal cluster 3

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNR3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNR3 Gene

Localization for RNR3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RNR3 gene
Compartment Confidence
cytosol 2
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNR3 Gene

Pathways & Interactions for RNR3 Gene

genes like me logo Genes that share pathways with RNR3: view

Pathways by source for RNR3 Gene

1 GeneGo (Thomson Reuters) pathway for RNR3 Gene

Interacting Proteins for RNR3 Gene

Gene Ontology (GO) - Biological Process for RNR3 Gene

None

No data available for SIGNOR curated interactions for RNR3 Gene

Drugs & Compounds for RNR3 Gene

No Compound Related Data Available

Transcripts for RNR3 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNR3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNR3 Gene

No ASD Table

Relevant External Links for RNR3 Gene

ECgene alternative splicing isoforms for
RNR3

No data available for mRNA/cDNA for RNR3 Gene

Expression for RNR3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNR3 Gene:

RNR3
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNR3 Gene

Orthologs for RNR3 Gene

No data available for Orthologs and Evolution for RNR3 Gene

Paralogs for RNR3 Gene

No data available for Paralogs for RNR3 Gene

Variants for RNR3 Gene

Relevant External Links for RNR3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNR3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNR3 Gene

Disorders for RNR3 Gene

No disorders were found for RNR3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNR3 Gene

Publications for RNR3 Gene

  1. Human rDNA: evolutionary patterns within the genes and tandem arrays derived from multiple chromosomes. (PMID: 11350117) Gonzalez IL … Sylvester JE (Genomics 2001) 2 3 60
  2. Human ribosomal RNA gene: nucleotide sequence of the transcription initiation region and comparison of three mammalian genes. (PMID: 6954460) Financsek I … Muramatsu M (Proceedings of the National Academy of Sciences of the United States of America 1982) 2 3 60
  3. A Portrait of Ribosomal DNA Contacts with Hi-C Reveals 5S and 45S rDNA Anchoring Points in the Folded Human Genome. (PMID: 27797956) Yu S … Lemos B (Genome biology and evolution 2016) 3 60
  4. Nucleolar organizer regions: genomic 'dark matter' requiring illumination. (PMID: 27474438) McStay B (Genes & development 2016) 3 60
  5. The Epigenetic Pathways to Ribosomal DNA Silencing. (PMID: 27250769) Srivastava R … Ahn SH (Microbiology and molecular biology reviews : MMBR 2016) 3 60

Products for RNR3 Gene

Sources for RNR3 Gene

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