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Aliases for RNGTTP1 Gene

Subcategory (RNA class) for RNGTTP1 Gene

lncRNA

Aliases for RNGTTP1 Gene

  • RNA Guanylyltransferase And 5'-Phosphatase Pseudogene 1 2
  • RNA Guanylyltransferase And 5-Phosphatase Pseudogene 1 2 3 5

External Ids for RNGTTP1 Gene

ORGUL Members for RNGTTP1 Gene

Previous GeneCards Identifiers for RNGTTP1 Gene

  • GC21P027017

Summaries for RNGTTP1 Gene

GeneCards Summary for RNGTTP1 Gene

RNGTTP1 (RNA Guanylyltransferase And 5'-Phosphatase Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RNGTTP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNGTTP1 Gene

Genomics for RNGTTP1 Gene

GeneHancer (GH) Regulatory Elements for RNGTTP1 Gene

Promoters and enhancers for RNGTTP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I025638 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.8 -3.8 -3810 2.6 RB1 ZNF76 ZNF335 GLIS2 ZNF366 ZNF143 BCLAF1 EGR2 SMARCA5 SP3 JAM2 MRPL39 GABPA ATP5PF RNGTTP1
GH21I025670 Enhancer 0.3 ENCODE 0.3 +27.3 27289 0.8 JUND MRPL39 JAM2 FDX1P2 RNGTTP1
GH21I025658 Enhancer 0.2 ENCODE 0.4 +15.2 15155 0.2 GABPA ATP5PF JAM2 RNGTTP1 FDX1P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNGTTP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNGTTP1 Gene

Genomic Locations for RNGTTP1 Gene
chr21:25,643,489-25,644,219
(GRCh38/hg38)
Size:
731 bases
Orientation:
Plus strand
chr21:27,015,801-27,016,531
(GRCh37/hg19)

Genomic View for RNGTTP1 Gene

Genes around RNGTTP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNGTTP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNGTTP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNGTTP1 Gene

Proteins for RNGTTP1 Gene

Post-translational modifications for RNGTTP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNGTTP1 Gene

Domains & Families for RNGTTP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNGTTP1 Gene

Function for RNGTTP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNGTTP1 Gene

Localization for RNGTTP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNGTTP1 Gene

Pathways & Interactions for RNGTTP1 Gene

SuperPathways for RNGTTP1 Gene

No Data Available

Interacting Proteins for RNGTTP1 Gene

Gene Ontology (GO) - Biological Process for RNGTTP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNGTTP1 Gene

Drugs & Compounds for RNGTTP1 Gene

No Compound Related Data Available

Transcripts for RNGTTP1 Gene

mRNA/cDNA for RNGTTP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNGTTP1 Gene

No ASD Table

Relevant External Links for RNGTTP1 Gene

GeneLoc Exon Structure for
RNGTTP1
ECgene alternative splicing isoforms for
RNGTTP1

Expression for RNGTTP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNGTTP1 Gene

mRNA differential expression in normal tissues according to GTEx for RNGTTP1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x10.1) and Brain - Cerebellum (x6.2).

NURSA nuclear receptor signaling pathways regulating expression of RNGTTP1 Gene:

RNGTTP1
genes like me logo Genes that share expression patterns with RNGTTP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNGTTP1 Gene

Orthologs for RNGTTP1 Gene

Evolution for RNGTTP1 Gene

ENSEMBL:
Gene Tree for RNGTTP1 (if available)
TreeFam:
Gene Tree for RNGTTP1 (if available)

No data available for Orthologs for RNGTTP1 Gene

Paralogs for RNGTTP1 Gene

No data available for Paralogs for RNGTTP1 Gene

Variants for RNGTTP1 Gene

Additional Variant Information for RNGTTP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNGTTP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNGTTP1 Gene

Disorders for RNGTTP1 Gene

No disorders were found for RNGTTP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNGTTP1 Gene

Publications for RNGTTP1 Gene

No publications were found for RNGTTP1 Gene.

Products for RNGTTP1 Gene

Sources for RNGTTP1 Gene

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