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Aliases for RNGTT Gene

Aliases for RNGTT Gene

  • RNA Guanylyltransferase And 5'-Phosphatase 2
  • RNA Guanylyltransferase And 5-Phosphatase 2 3 5
  • HCAP1 3 4
  • CAP1A 3 4
  • HCE 3 4
  • MRNA-Capping Enzyme 3
  • HCAP 3
  • HCE1 3

External Ids for RNGTT Gene

Previous GeneCards Identifiers for RNGTT Gene

  • GC06M089266
  • GC06M089315
  • GC06M089376
  • GC06M086535

Summaries for RNGTT Gene

GeneCards Summary for RNGTT Gene

RNGTT (RNA Guanylyltransferase And 5'-Phosphatase) is a Protein Coding gene. Diseases associated with RNGTT include Cecum Adenocarcinoma. Among its related pathways are mRNA surveillance pathway and Formation of HIV elongation complex in the absence of HIV Tat. GO annotations related to this gene include GTP binding and protein tyrosine phosphatase activity. An important paralog of this gene is DUSP11.

UniProtKB/Swiss-Prot for RNGTT Gene

  • Bifunctional mRNA-capping enzyme exhibiting RNA 5-triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5-diphosphate terminus.

Gene Wiki entry for RNGTT Gene

Additional gene information for RNGTT Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNGTT Gene

Genomics for RNGTT Gene

Regulatory Elements for RNGTT Gene

Enhancers for RNGTT Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H088962 1.1 ENCODE 20 +0.1 142 2 HDGF ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 SP3 SP5 RNGTT ENSG00000222145
GH06H089033 1.7 FANTOM5 Ensembl ENCODE 7.7 -72.2 -72186 4 PKNOX1 FOXA2 ATF1 ARNT ARID4B SIN3A FEZF1 DMAP1 BRCA1 YY1 PNRC1 SRSF12 RNGTT UBE2J1 RRAGD GC06M089046 PIR60881
GH06H089345 2 FANTOM5 Ensembl ENCODE dbSUPER 5.7 -386.5 -386535 8 HDGF PKNOX1 SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B SLC30A9 ZNF766 ZNF207 CASP8AP2 UBE2J1 SRSF12 RRAGD GABRR2 TUBB3P1 PNRC1 ANKRD6 RNGTT GABRR1
GH06H089117 0.8 ENCODE 9.8 -154.1 -154086 0 CTCF MXI1 ZIC2 FOXM1 GLIS2 POLR2A PATZ1 ZNF350 ZNF600 ZBTB20 CASP8AP2 RNGTT SRSF12 PM20D2
GH06H089354 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.8 -393.8 -393774 5 BCOR HDGF PKNOX1 TBL1XR1 CHD4 ZMYM3 EBF1 RELA YY1 POLR2A PM20D2 RRAGD GABRR2 RNGTT UBE2J1 GC06M089406
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNGTT on UCSC Golden Path with GeneCards custom track

Promoters for RNGTT Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000199852 221 2201 HDGF ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 SP3 SP5

Genomic Location for RNGTT Gene

Chromosome:
6
Start:
88,609,897 bp from pter
End:
88,963,721 bp from pter
Size:
353,825 bases
Orientation:
Minus strand

Genomic View for RNGTT Gene

Genes around RNGTT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNGTT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNGTT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNGTT Gene

Proteins for RNGTT Gene

  • Protein details for RNGTT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60942-MCE1_HUMAN
    Recommended name:
    mRNA-capping enzyme
    Protein Accession:
    O60942
    Secondary Accessions:
    • E1P513
    • E1P514
    • O43483
    • O60257
    • O60351
    • Q5TCW8
    • Q8WUM8

    Protein attributes for RNGTT Gene

    Size:
    597 amino acids
    Molecular mass:
    68557 Da
    Quaternary structure:
    • Interacts with POLR2A (via C-terminus); this enhances guanylyltransferase activity. Binds (via GTase domain) to the elongating phosphorylated form of RNA polymerase II; can form direct interactions with the phosphorylated POLR2A C-terminal domain and indirect interactions via bound RNA (By similarity). Interacts with SUPT5H and RNMT. Interacts with HIV-1 Tat.
    Miscellaneous:
    • Isoform 2 to isoform 4 lack mRNA 5-guanylyltransferase activity due to disruptions of the GTase domain.

    Three dimensional structures from OCA and Proteopedia for RNGTT Gene

    Alternative splice isoforms for RNGTT Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RNGTT Gene

Post-translational modifications for RNGTT Gene

  • Ubiquitination at isoforms=2, 3, 428 and Lys171
  • Modification sites at PhosphoSitePlus

Other Protein References for RNGTT Gene

No data available for DME Specific Peptides for RNGTT Gene

Domains & Families for RNGTT Gene

Gene Families for RNGTT Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Plasma proteins
  • Predicted intracellular proteins

Graphical View of Domain Structure for InterPro Entry

O60942

UniProtKB/Swiss-Prot:

MCE1_HUMAN :
  • In the N-terminal section; belongs to the non-receptor class of the protein-tyrosine phosphatase family.
Family:
  • In the N-terminal section; belongs to the non-receptor class of the protein-tyrosine phosphatase family.
  • In the C-terminal section; belongs to the eukaryotic GTase family.
genes like me logo Genes that share domains with RNGTT: view

Function for RNGTT Gene

Molecular function for RNGTT Gene

GENATLAS Biochemistry:
messenger RNA capping bifunctional enzyme
UniProtKB/Swiss-Prot CatalyticActivity:
A 5-phosphopolynucleotide + H(2)O = a polynucleotide + phosphate.
UniProtKB/Swiss-Prot CatalyticActivity:
GTP + (5)pp-Pur-mRNA = diphosphate + G(5)ppp-Pur-mRNA.
UniProtKB/Swiss-Prot Function:
Bifunctional mRNA-capping enzyme exhibiting RNA 5-triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5-diphosphate terminus.

Phenotypes From GWAS Catalog for RNGTT Gene

Gene Ontology (GO) - Molecular Function for RNGTT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity IEA --
GO:0004484 mRNA guanylyltransferase activity IDA 9473487
GO:0004651 polynucleotide 5-phosphatase activity TAS --
GO:0004725 protein tyrosine phosphatase activity IEA --
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RNGTT: view
genes like me logo Genes that share phenotypes with RNGTT: view

Animal Model Products

  • Taconic Biosciences Mouse Models for RNGTT

CRISPR Products

miRNA for RNGTT Gene

miRTarBase miRNAs that target RNGTT

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for RNGTT
  • Applied Biological Materials Clones for RNGTT
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNGTT Gene

Localization for RNGTT Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNGTT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RNGTT gene
Compartment Confidence
nucleus 5
cytosol 2
plasma membrane 1
extracellular 1
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for RNGTT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS 9473487
GO:0005654 nucleoplasm TAS --
genes like me logo Genes that share ontologies with RNGTT: view

Pathways & Interactions for RNGTT Gene

genes like me logo Genes that share pathways with RNGTT: view

Pathways by source for RNGTT Gene

1 BioSystems pathway for RNGTT Gene
1 KEGG pathway for RNGTT Gene

Gene Ontology (GO) - Biological Process for RNGTT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006366 transcription from RNA polymerase II promoter TAS --
GO:0006370 7-methylguanosine mRNA capping IDA,TAS --
GO:0006396 RNA processing IDA 21636784
GO:0006397 mRNA processing IEA --
GO:0006470 protein dephosphorylation IEA --
genes like me logo Genes that share ontologies with RNGTT: view

No data available for SIGNOR curated interactions for RNGTT Gene

Drugs & Compounds for RNGTT Gene

(12) Drugs for RNGTT Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Isopropyl alcohol Approved Pharma Target 0
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
Guanosine triphosphate Experimental Pharma 0

(10) Additional Compounds for RNGTT Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Phosphate
  • NFB Orthophosphate
  • O-Phosphoric acid
  • Ortho-phosphate
  • Orthophosphate (PO43-)
  • Orthophosphate(3-)
14265-44-2
pyrophosphate
  • (4-)Diphosphoric acid ion
  • (P2O74-)Diphosphate
  • Diphosphate
  • Diphosphoric acid
  • PPi
14000-31-8
genes like me logo Genes that share compounds with RNGTT: view

Transcripts for RNGTT Gene

Unigene Clusters for RNGTT Gene

RNA guanylyltransferase and 5-phosphatase:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for RNGTT
  • Applied Biological Materials Clones for RNGTT
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNGTT Gene

No ASD Table

Relevant External Links for RNGTT Gene

GeneLoc Exon Structure for
RNGTT
ECgene alternative splicing isoforms for
RNGTT

Expression for RNGTT Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNGTT Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RNGTT Gene

This gene is overexpressed in Urine (39.7), Peripheral blood mononuclear cells (7.5), and Testis (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RNGTT Gene



Protein tissue co-expression partners for RNGTT Gene

NURSA nuclear receptor signaling pathways regulating expression of RNGTT Gene:

RNGTT

SOURCE GeneReport for Unigene cluster for RNGTT Gene:

Hs.567378

mRNA Expression by UniProt/SwissProt for RNGTT Gene:

O60942-MCE1_HUMAN
Tissue specificity: Isoform 1 and isoform 4 (at a lesser extent) are expressed in cerebrum, cerebellum, thyroid, lung, heart, liver, kidney, spleen, large intestine, testis, skin and muscle.

Evidence on tissue expression from TISSUES for RNGTT Gene

  • Skin(4.3)
  • Nervous system(3.4)
  • Eye(3)
  • Liver(2.2)
  • Blood(2)
genes like me logo Genes that share expression patterns with RNGTT: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNGTT Gene

Orthologs for RNGTT Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RNGTT Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNGTT 33 34
  • 99.94 (n)
dog
(Canis familiaris)
Mammalia RNGTT 33 34
  • 94.92 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RNGTT 34
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RNGTT 33 34
  • 93.93 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 93 (a)
OneToMany
-- 34
  • 74 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rngtt 33 16 34
  • 91.62 (n)
rat
(Rattus norvegicus)
Mammalia Rngtt 33
  • 91.28 (n)
chicken
(Gallus gallus)
Aves RNGTT 33 34
  • 82.17 (n)
lizard
(Anolis carolinensis)
Reptilia RNGTT 34
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rngtt 33
  • 76.7 (n)
Str.20130 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.612 33
zebrafish
(Danio rerio)
Actinopterygii rngtt 33 34
  • 70.18 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6807 33
fruit fly
(Drosophila melanogaster)
Insecta mRNA-cap 33 34
  • 54.58 (n)
mRNA-capping-enzyme 35
  • 54 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005142 33
  • 52.59 (n)
worm
(Caenorhabditis elegans)
Secernentea cel-1 35 33 34
  • 49.97 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CEG1 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G09100 33
  • 47.97 (n)
rice
(Oryza sativa)
Liliopsida Os12g0193200 33
  • 47.6 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5117 34
  • 54 (a)
OneToOne
Species where no ortholog for RNGTT was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RNGTT Gene

ENSEMBL:
Gene Tree for RNGTT (if available)
TreeFam:
Gene Tree for RNGTT (if available)

Paralogs for RNGTT Gene

Paralogs for RNGTT Gene

(1) SIMAP similar genes for RNGTT Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for RNGTT Gene

genes like me logo Genes that share paralogs with RNGTT: view

Variants for RNGTT Gene

Sequence variations from dbSNP and Humsavar for RNGTT Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000016428 -- 88,802,588(+) ACATA(C/T)CCGAG intron-variant
rs1000018652 -- 88,670,863(+) GACGC(A/G)AGTCT intron-variant
rs1000022189 -- 88,758,949(+) ATGTA(C/T)ACATG intron-variant
rs1000032045 -- 88,899,480(+) ACTAC(A/G)TTGCC intron-variant
rs1000045443 -- 88,629,541(+) TTCCT(G/T)AGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNGTT Gene

Variant ID Type Subtype PubMed ID
dgv6087n100 CNV gain 25217958
esv2000290 CNV deletion 18987734
esv22257 CNV loss 19812545
esv2458928 CNV deletion 19546169
esv2576850 CNV deletion 19546169
esv2660011 CNV deletion 23128226
esv2661539 CNV deletion 23128226
esv2663981 CNV deletion 23128226
esv2667862 CNV deletion 23128226
esv2732400 CNV deletion 23290073
esv2732401 CNV deletion 23290073
esv2732402 CNV deletion 23290073
esv2732403 CNV deletion 23290073
esv2732404 CNV deletion 23290073
esv3306454 CNV mobile element insertion 20981092
esv3391527 CNV insertion 20981092
esv3401113 CNV insertion 20981092
esv3433762 CNV insertion 20981092
esv3540118 CNV deletion 23714750
esv3609887 CNV loss 21293372
esv3609889 CNV loss 21293372
esv3609890 CNV loss 21293372
nsv528054 CNV loss 19592680
nsv5390 CNV deletion 18451855
nsv950479 CNV deletion 24416366

Variation tolerance for RNGTT Gene

Residual Variation Intolerance Score: 10.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.48; 28.91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNGTT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNGTT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNGTT Gene

Disorders for RNGTT Gene

MalaCards: The human disease database

(1) MalaCards diseases for RNGTT Gene - From: DISEASES

Disorder Aliases PubMed IDs
cecum adenocarcinoma
  • adenocarcinoma of cecum
- elite association - COSMIC cancer census association via MalaCards
Search RNGTT in MalaCards View complete list of genes associated with diseases

Relevant External Links for RNGTT

Genetic Association Database (GAD)
RNGTT
Human Genome Epidemiology (HuGE) Navigator
RNGTT
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNGTT
genes like me logo Genes that share disorders with RNGTT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RNGTT Gene

Publications for RNGTT Gene

  1. Isolation and characterization of a human cDNA for mRNA 5'-capping enzyme. (PMID: 9512541) Yamada-Okabe T … Yamada-Okabe H (Nucleic acids research 1998) 2 3 4 22 60
  2. Human mRNA capping enzyme (RNGTT) and cap methyltransferase (RNMT) map to 6q16 and 18p11.22-p11.23, respectively. (PMID: 9828141) Pillutla RC … Shatkin AJ (Genomics 1998) 2 3 22 60
  3. Cloning and characterization of two human cDNAs encoding the mRNA capping enzyme. (PMID: 9473487) Tsukamoto T … Mizumoto K (Biochemical and biophysical research communications 1998) 3 4 22 60
  4. Structure of the guanylyltransferase domain of human mRNA capping enzyme. (PMID: 21636784) Chu C … Shatkin AJ (Proceedings of the National Academy of Sciences of the United States of America 2011) 3 4 60
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60

Products for RNGTT Gene

  • Addgene plasmids for RNGTT

Sources for RNGTT Gene

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