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Aliases for RNF5P1 Gene

Aliases for RNF5P1 Gene

  • Ring Finger Protein 5, E3 Ubiquitin Protein Ligase Pseudogene 1 2 3
  • Ring Finger Protein 5 Pseudogene 1 2

External Ids for RNF5P1 Gene

Previous GeneCards Identifiers for RNF5P1 Gene

  • GC00U921549
  • GC08M038457
  • GC08M036992

Summaries for RNF5P1 Gene

GeneCards Summary for RNF5P1 Gene

RNF5P1 (Ring Finger Protein 5, E3 Ubiquitin Protein Ligase Pseudogene 1) is a Pseudogene.

Gene Wiki entry for RNF5P1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF5P1 Gene

Genomics for RNF5P1 Gene

Regulatory Elements for RNF5P1 Gene

Genomic Location for RNF5P1 Gene

Chromosome:
8
Start:
38,600,173 bp from pter
End:
38,601,257 bp from pter
Size:
1,085 bases
Orientation:
Minus strand

Genomic View for RNF5P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for RNF5P1 Gene

Proteins for RNF5P1 Gene

Post-translational modifications for RNF5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF5P1 Gene

Domains & Families for RNF5P1 Gene

Gene Families for RNF5P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF5P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF5P1 Gene

Function for RNF5P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF5P1 Gene

Localization for RNF5P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF5P1 Gene

Pathways & Interactions for RNF5P1 Gene

SuperPathways for RNF5P1 Gene

No Data Available

Interacting Proteins for RNF5P1 Gene

Gene Ontology (GO) - Biological Process for RNF5P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF5P1 Gene

Drugs & Compounds for RNF5P1 Gene

No Compound Related Data Available

Transcripts for RNF5P1 Gene

mRNA/cDNA for RNF5P1 Gene

(1) Additional mRNA sequences :
(27) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF5P1 Gene

Ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF5P1 Gene

No ASD Table

Relevant External Links for RNF5P1 Gene

GeneLoc Exon Structure for
RNF5P1
ECgene alternative splicing isoforms for
RNF5P1

Expression for RNF5P1 Gene

mRNA expression in normal human tissues for RNF5P1 Gene

SOURCE GeneReport for Unigene cluster for RNF5P1 Gene Hs.512071

genes like me logo Genes that share expression patterns with RNF5P1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNF5P1 Gene

Orthologs for RNF5P1 Gene

Evolution for RNF5P1 Gene

ENSEMBL:
Gene Tree for RNF5P1 (if available)
TreeFam:
Gene Tree for RNF5P1 (if available)

No data available for Orthologs for RNF5P1 Gene

Paralogs for RNF5P1 Gene

No data available for Paralogs for RNF5P1 Gene

Variants for RNF5P1 Gene

Sequence variations from dbSNP and Humsavar for RNF5P1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs15078 -- 38,600,240(+) GTGAG(A/G)GGGAG nc-transcript-variant
rs327932 -- 38,599,719(+) atttt(A/G)ttatt downstream-variant-500B
rs327933 -- 38,600,591(+) GAGTA(A/C)GGAAG nc-transcript-variant
rs327934 -- 38,601,141(+) CCCGC(C/T)CCGCC nc-transcript-variant
rs327935 -- 38,601,284(+) CCAAG(A/C)CGCTC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNF5P1 Gene

Variant ID Type Subtype PubMed ID
dgv1929e1 CNV Complex 17122850
nsv830629 CNV Loss 17160897
nsv884706 CNV Loss 21882294
nsv884707 CNV Loss 21882294
esv24778 CNV Loss 19812545
nsv831295 CNV Gain+Loss 17160897

Relevant External Links for RNF5P1 Gene

HapMap Linkage Disequilibrium report
RNF5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF5P1 Gene

Disorders for RNF5P1 Gene

Relevant External Links for RNF5P1

Genetic Association Database (GAD)
RNF5P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF5P1
genes like me logo Genes that share disorders with RNF5P1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF5P1 Gene

Publications for RNF5P1 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 67
  2. Genome-wide association study of pancreatic cancer in Japanese population. (PMID: 20686608) Low S.K. … Sakamoto H. (PLoS ONE 2010) 67
  3. Recognition and ubiquitination of Salmonella type III effector SopA by a ubiquitin E3 ligase, HsRMA1. (PMID: 16176924) Zhang Y. … Zhou D. (J. Biol. Chem. 2005) 67
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
  5. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 67

Products for RNF5P1 Gene

Sources for RNF5P1 Gene

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