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Aliases for RNF5P1 Gene

Aliases for RNF5P1 Gene

  • Ring Finger Protein 5 Pseudogene 1 2 3 5
  • Ring Finger Protein 5, E3 Ubiquitin Protein Ligase Pseudogene 1 2

External Ids for RNF5P1 Gene

Previous GeneCards Identifiers for RNF5P1 Gene

  • GC00U921549
  • GC08M038457
  • GC08M036992

Summaries for RNF5P1 Gene

GeneCards Summary for RNF5P1 Gene

RNF5P1 (Ring Finger Protein 5 Pseudogene 1) is a Pseudogene.

Gene Wiki entry for RNF5P1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF5P1 Gene

Genomics for RNF5P1 Gene

Regulatory Elements for RNF5P1 Gene

Enhancers for RNF5P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F038604 0.2 ENCODE 0.8 -3.3 -3281 0.2 FGFR1 ENSG00000255201 RNF5P1 ENSG00000254321
GH08F038612 1.3 Ensembl ENCODE 0.4 -11.9 -11899 1.7 CTCF HLF BHLHE40 ZNF384 RAD21 ZNF664 ZFHX2 SMC3 ZNF580 ZBTB33 FGFR1 TACC1 ENSG00000255201 RNF5P1 ENSG00000254321
GH08F038625 0.9 Ensembl ENCODE 0.3 -25.0 -24962 1.9 BRD4 PKNOX1 ZMYM3 FEZF1 ZIC2 ZNF324 ZNF23 PATZ1 SCRT2 PRDM10 C8orf86 TACC1 RNF5P1 ENSG00000254321
GH08F038621 0.2 ENCODE 0.3 -21.6 -21557 1.6 FGFR1 RNF5P1 ENSG00000254321
GH08F038633 0.3 FANTOM5 0.3 -32.9 -32851 0.2 FGFR1 ENSG00000255201 ADAM32 RNF5P1 ENSG00000254321
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNF5P1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF5P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001900477 156 599 ZNF407

Genomic Location for RNF5P1 Gene

Chromosome:
8
Start:
38,600,173 bp from pter
End:
38,601,257 bp from pter
Size:
1,085 bases
Orientation:
Minus strand

Genomic View for RNF5P1 Gene

Genes around RNF5P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF5P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF5P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF5P1 Gene

Proteins for RNF5P1 Gene

Post-translational modifications for RNF5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF5P1 Gene

Domains & Families for RNF5P1 Gene

Gene Families for RNF5P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF5P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF5P1 Gene

Function for RNF5P1 Gene

Phenotypes for RNF5P1 Gene

GenomeRNAi human phenotypes for RNF5P1:
genes like me logo Genes that share phenotypes with RNF5P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF5P1 Gene

Localization for RNF5P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF5P1 Gene

Pathways & Interactions for RNF5P1 Gene

SuperPathways for RNF5P1 Gene

No Data Available

Interacting Proteins for RNF5P1 Gene

Gene Ontology (GO) - Biological Process for RNF5P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF5P1 Gene

Transcripts for RNF5P1 Gene

mRNA/cDNA for RNF5P1 Gene

(1) Additional mRNA sequences :
(27) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF5P1 Gene

Ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF5P1 Gene

No ASD Table

Relevant External Links for RNF5P1 Gene

GeneLoc Exon Structure for
RNF5P1
ECgene alternative splicing isoforms for
RNF5P1

Expression for RNF5P1 Gene

mRNA expression in normal human tissues for RNF5P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNF5P1 Gene:

RNF5P1

SOURCE GeneReport for Unigene cluster for RNF5P1 Gene:

Hs.512071
genes like me logo Genes that share expression patterns with RNF5P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF5P1 Gene

Orthologs for RNF5P1 Gene

Evolution for RNF5P1 Gene

ENSEMBL:
Gene Tree for RNF5P1 (if available)
TreeFam:
Gene Tree for RNF5P1 (if available)

No data available for Orthologs for RNF5P1 Gene

Paralogs for RNF5P1 Gene

No data available for Paralogs for RNF5P1 Gene

Variants for RNF5P1 Gene

Sequence variations from dbSNP and Humsavar for RNF5P1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10093892 -- 38,602,386(+) ACTCC(C/T)GGTTC upstream-variant-2KB
rs10646156 -- 38,602,408(+) TTTTT(-/T/TT/TTT)CGAGA upstream-variant-2KB
rs111522519 -- 38,602,033(+) CACAA(A/T)GCAAC upstream-variant-2KB
rs111622356 -- 38,600,325(+) TGGGG(A/G)AAGAG nc-transcript-variant
rs111797319 -- 38,602,135(+) CCCTC(A/C)TTTTC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNF5P1 Gene

Variant ID Type Subtype PubMed ID
dgv1391e214 CNV loss 21293372
esv3616931 CNV gain 21293372
nsv831295 CNV gain+loss 17160897

Relevant External Links for RNF5P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF5P1 Gene

Disorders for RNF5P1 Gene

Relevant External Links for RNF5P1

Genetic Association Database (GAD)
RNF5P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF5P1

No disorders were found for RNF5P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF5P1 Gene

Publications for RNF5P1 Gene

  1. Genome-wide association study of pancreatic cancer in Japanese population. (PMID: 20686608) Low S.K. … Sakamoto H. (PLoS ONE 2010) 3 46 64
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  3. Recognition and ubiquitination of Salmonella type III effector SopA by a ubiquitin E3 ligase, HsRMA1. (PMID: 16176924) Zhang Y. … Zhou D. (J. Biol. Chem. 2005) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  5. RNF5, a RING finger protein that regulates cell motility by targeting paxillin ubiquitination and altered localization. (PMID: 12861019) Didier C. … Ronai Z. (Mol. Cell. Biol. 2003) 3 64

Products for RNF5P1 Gene

Sources for RNF5P1 Gene

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