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Aliases for RNF5P1 Gene

Aliases for RNF5P1 Gene

  • Ring Finger Protein 5 Pseudogene 1 2 3
  • Ring Finger Protein 5, E3 Ubiquitin Protein Ligase Pseudogene 1 2

External Ids for RNF5P1 Gene

Previous GeneCards Identifiers for RNF5P1 Gene

  • GC00U921549
  • GC08M038457
  • GC08M036992

Summaries for RNF5P1 Gene

GeneCards Summary for RNF5P1 Gene

RNF5P1 (Ring Finger Protein 5 Pseudogene 1) is a Pseudogene.

Gene Wiki entry for RNF5P1 Gene

Additional gene information for RNF5P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF5P1 Gene

Genomics for RNF5P1 Gene

GeneHancer (GH) Regulatory Elements for RNF5P1 Gene

Promoters and enhancers for RNF5P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I038601 Promoter 0.6 Ensembl 550.8 +0.1 56 0.4 ZNF407 GC08M038600 GC08M038601 RNF5P1 FGFR1 ENSG00000255201
GH08I038625 Enhancer 1 Ensembl ENCODE 0.3 -25.0 -24962 1.9 PKNOX1 ZNF473 MZF1 FEZF1 ZNF335 ZNF23 SCRT2 ZNF114 ZNF662 ZNF398 ENSG00000255201 C8orf86 LOC728024 ADGRA2 FGFR1 TACC1 ERLIN2 RPS20P22 DDHD2 RNF5P1
GH08I038612 Enhancer 0.7 Ensembl ENCODE 0.4 -11.9 -11899 1.7 ZFHX2 HLF ZC3H11A FOS MAFK EGR2 FGFR1 TACC1 ENSG00000255201 RNF5P1 ENSG00000254321
GH08I038644 Enhancer 0.8 ENCODE 0.3 -43.8 -43767 0.6 KLF17 MZF1 FEZF1 ZIC2 BCL11B RELA ZNF664 ZBTB48 RCOR1 KLF7 FGFR1 TACC1 RNF5P1 ENSG00000254321
GH08I038658 Enhancer 0.9 Ensembl ENCODE 0.2 -58.2 -58231 3 SOX13 ZNF384 CEBPG ZNF644 RAD21 TEAD3 ZNF350 FOS SOX5 TEAD1 TACC1 FGFR1 ENSG00000255201 ENSG00000254321 RNF5P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNF5P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RNF5P1 gene promoter:

Genomic Locations for RNF5P1 Gene

Genomic Locations for RNF5P1 Gene
chr8:38,600,173-38,601,257
(GRCh38/hg38)
Size:
1,085 bases
Orientation:
Minus strand
chr8:38,457,691-38,458,775
(GRCh37/hg19)

Genomic View for RNF5P1 Gene

Genes around RNF5P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF5P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF5P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF5P1 Gene

Proteins for RNF5P1 Gene

Post-translational modifications for RNF5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF5P1 Gene

Domains & Families for RNF5P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF5P1 Gene

Function for RNF5P1 Gene

Phenotypes From GWAS Catalog for RNF5P1 Gene

Phenotypes for RNF5P1 Gene

GenomeRNAi human phenotypes for RNF5P1:
genes like me logo Genes that share phenotypes with RNF5P1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF5P1 Gene

Localization for RNF5P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF5P1 Gene

Pathways & Interactions for RNF5P1 Gene

SuperPathways for RNF5P1 Gene

No Data Available

Interacting Proteins for RNF5P1 Gene

Gene Ontology (GO) - Biological Process for RNF5P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF5P1 Gene

Drugs & Compounds for RNF5P1 Gene

No Compound Related Data Available

Transcripts for RNF5P1 Gene

mRNA/cDNA for RNF5P1 Gene

(1) Additional mRNA sequences :
(27) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF5P1 Gene

Ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF5P1 Gene

No ASD Table

Relevant External Links for RNF5P1 Gene

GeneLoc Exon Structure for
RNF5P1
ECgene alternative splicing isoforms for
RNF5P1

Expression for RNF5P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF5P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNF5P1 Gene:

RNF5P1

SOURCE GeneReport for Unigene cluster for RNF5P1 Gene:

Hs.512071
genes like me logo Genes that share expression patterns with RNF5P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF5P1 Gene

Orthologs for RNF5P1 Gene

Evolution for RNF5P1 Gene

ENSEMBL:
Gene Tree for RNF5P1 (if available)
TreeFam:
Gene Tree for RNF5P1 (if available)

No data available for Orthologs for RNF5P1 Gene

Paralogs for RNF5P1 Gene

No data available for Paralogs for RNF5P1 Gene

Variants for RNF5P1 Gene

Sequence variations from dbSNP and Humsavar for RNF5P1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1001779666 -- 38,601,882(-) G/A upstream_transcript_variant
rs1002219497 -- 38,600,595(-) A/G non_coding_transcript_variant
rs1002228755 -- 38,602,153(-) G/A upstream_transcript_variant
rs1002716019 -- 38,601,547(-) A/G upstream_transcript_variant
rs1003717784 -- 38,603,148(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF5P1 Gene

Variant ID Type Subtype PubMed ID
dgv1391e214 CNV loss 21293372
esv3616931 CNV gain 21293372
nsv831295 CNV gain+loss 17160897

Additional Variant Information for RNF5P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF5P1 Gene

Disorders for RNF5P1 Gene

Additional Disease Information for RNF5P1

No disorders were found for RNF5P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF5P1 Gene

Publications for RNF5P1 Gene

  1. Genome-wide association study of pancreatic cancer in Japanese population. (PMID: 20686608) Low SK … Sakamoto H (PloS one 2010) 3 44 58
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 58
  3. Recognition and ubiquitination of Salmonella type III effector SopA by a ubiquitin E3 ligase, HsRMA1. (PMID: 16176924) Zhang Y … Zhou D (The Journal of biological chemistry 2005) 3 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  5. RNF5, a RING finger protein that regulates cell motility by targeting paxillin ubiquitination and altered localization. (PMID: 12861019) Didier C … Ronai Z (Molecular and cellular biology 2003) 3 58

Products for RNF5P1 Gene

Sources for RNF5P1 Gene

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