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Aliases for RNF44 Gene

Aliases for RNF44 Gene

  • Ring Finger Protein 44 2 3 5
  • KIAA1100 4

External Ids for RNF44 Gene

Previous GeneCards Identifiers for RNF44 Gene

  • GC00U991271
  • GC05M175889
  • GC05M175934
  • GC05M175886
  • GC05M170877

Summaries for RNF44 Gene

Entrez Gene Summary for RNF44 Gene

  • The protein encoded by this gene contains a RING finger, a motif present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. [provided by RefSeq, Jul 2008]

GeneCards Summary for RNF44 Gene

RNF44 (Ring Finger Protein 44) is a Protein Coding gene. An important paralog of this gene is RNF38.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF44 Gene

Genomics for RNF44 Gene

Regulatory Elements for RNF44 Gene

Enhancers for RNF44 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNF44 on UCSC Golden Path with GeneCards custom track

Promoters for RNF44 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNF44 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNF44 Gene

176,526,697 bp from pter
176,543,413 bp from pter
16,717 bases
Minus strand

Genomic View for RNF44 Gene

Genes around RNF44 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF44 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF44 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF44 Gene

Proteins for RNF44 Gene

  • Protein details for RNF44 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    RING finger protein 44
    Protein Accession:
    Secondary Accessions:
    • B4DYE0
    • Q8ND05
    • Q9UPQ2

    Protein attributes for RNF44 Gene

    432 amino acids
    Molecular mass:
    47728 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA83052.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for RNF44 Gene


neXtProt entry for RNF44 Gene

Proteomics data for RNF44 Gene at MOPED

Post-translational modifications for RNF44 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RNF44 Gene

No data available for DME Specific Peptides for RNF44 Gene

Domains & Families for RNF44 Gene

Gene Families for RNF44 Gene

Protein Domains for RNF44 Gene


Suggested Antigen Peptide Sequences for RNF44 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 RING-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with RNF44: view

Function for RNF44 Gene

genes like me logo Genes that share phenotypes with RNF44: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNF44 Gene

Localization for RNF44 Gene

Subcellular locations from

Jensen Localization Image for RNF44 Gene COMPARTMENTS Subcellular localization image for RNF44 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for RNF44 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with RNF44: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RNF44 Gene

Pathways & Interactions for RNF44 Gene

SuperPathways for RNF44 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF44 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IBA --
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA --
genes like me logo Genes that share ontologies with RNF44: view

No data available for Pathways by source and SIGNOR curated interactions for RNF44 Gene

Drugs & Compounds for RNF44 Gene

No Compound Related Data Available

Transcripts for RNF44 Gene

Unigene Clusters for RNF44 Gene

Ring finger protein 44:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF44 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12a · 12b
SP1: -
SP3: -
SP4: -
SP7: -

Relevant External Links for RNF44 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNF44 Gene

mRNA expression in normal human tissues for RNF44 Gene

Protein differential expression in normal tissues from HIPED for RNF44 Gene

This gene is overexpressed in Platelet (39.3) and Pancreas (29.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RNF44 Gene

SOURCE GeneReport for Unigene cluster for RNF44 Gene Hs.434888

genes like me logo Genes that share expression patterns with RNF44: view

Protein tissue co-expression partners for RNF44 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RNF44 Gene

Orthologs for RNF44 Gene

This gene was present in the common ancestor of animals.

Orthologs for RNF44 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia RNF44 35
  • 91.28 (n)
  • 93.29 (a)
RNF44 36
  • 93 (a)
(Canis familiaris)
Mammalia RNF44 35
  • 92.65 (n)
  • 96.29 (a)
RNF44 36
  • 94 (a)
(Mus musculus)
Mammalia Rnf44 35
  • 89.33 (n)
  • 91.65 (a)
Rnf44 16
Rnf44 36
  • 91 (a)
(Pan troglodytes)
Mammalia RNF44 35
  • 99.84 (n)
  • 100 (a)
RNF44 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Rnf44 35
  • 89.52 (n)
  • 94.29 (a)
(Monodelphis domestica)
Mammalia RNF44 36
  • 87 (a)
(Gallus gallus)
Aves RNF44 35
  • 79.81 (n)
  • 79.81 (a)
RNF44 36
  • 79 (a)
(Anolis carolinensis)
Reptilia RNF44 36
  • 77 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia rnf44 35
  • 72.51 (n)
  • 75.83 (a)
(Danio rerio)
Actinopterygii rnf44 35
  • 69.39 (n)
  • 69.7 (a)
rnf44 36
  • 67 (a)
fruit fly
(Drosophila melanogaster)
Insecta mura 36
  • 13 (a)
Species with no ortholog for RNF44:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNF44 Gene

Gene Tree for RNF44 (if available)
Gene Tree for RNF44 (if available)

Paralogs for RNF44 Gene

Paralogs for RNF44 Gene

(1) SIMAP similar genes for RNF44 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with RNF44: view

Variants for RNF44 Gene

Sequence variations from dbSNP and Humsavar for RNF44 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs876224 -- 176,532,918(-) TGAGC(G/T)GTCCT intron-variant
rs876225 -- 176,532,763(-) tcttt(C/T)ttttt intron-variant
rs890834 -- 176,528,813(+) CGGGC(A/C/G)GGCAG downstream-variant-500B, utr-variant-3-prime
rs890835 -- 176,529,270(+) GGAGC(A/C/T)GACCT intron-variant
rs890836 -- 176,537,482(+) GGGCC(A/G)CCATC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNF44 Gene

Variant ID Type Subtype PubMed ID
nsv516244 CNV Loss 19592680
nsv471056 CNV Loss 18288195
dgv6375n71 CNV Loss 21882294
esv2731169 CNV Deletion 23290073
esv2731170 CNV Deletion 23290073
esv2731171 CNV Deletion 23290073
nsv823350 CNV Gain 20364138

Variation tolerance for RNF44 Gene

Residual Variation Intolerance Score: 70.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.21; 39.85% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for RNF44 Gene

Disorders for RNF44 Gene

Relevant External Links for RNF44

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RNF44 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF44 Gene

Publications for RNF44 Gene

  1. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10470851) Kikuno R. … Ohara O. (DNA Res. 1999) 2 3 4 67
  2. Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways. (PMID: 22267201) Stolk L. … Lunetta K.L. (Nat. Genet. 2012) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for RNF44 Gene

Sources for RNF44 Gene