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RNF32 Gene

protein-coding   GIFtS: 49
GCID: GC07P156433

Ring Finger Protein 32

  Search for RNF32
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ring Finger Protein 321 2
FKSG332
HSD152
LMBR22

External Ids:    HGNC: 171181   Entrez Gene: 1405452   Ensembl: ENSG000001059827   OMIM: 6102415   UniProtKB: Q9H0A63   

Export aliases for RNF32 gene to outside databases

Previous GC identifers: GC07P154663 GC07P155735 GC07P155850 GC07P155932 GC07P156126 GC07P156117 GC07P150166


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RNF32 Gene:
The protein encoded by this gene contains two RING ring finger motifs. RING finger motifs are present in a variety
of functionally distinct proteins and are known to be involved in protein-DNA or protein-protein interactions.
This gene was found to be expressed during spermatogenesis, most likely in spermatocytes and/or in spermatids.
Several alternatively spliced transcript variants encoding the same protein have been found for this gene.
(provided by RefSeq, Jan 2011)

GeneCards Summary for RNF32 Gene:
RNF32 (ring finger protein 32) is a protein-coding gene.

UniProtKB/Swiss-Prot: RNF32_HUMAN, Q9H0A6
Function: May play a role in sperm formation

Gene Wiki entry for RNF32 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000007.14  NT_007933.16  NC_018918.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the RNF32 gene promoter:
         LHX3b/Lhx3b   Sox5   HTF   Nkx2-5   POU6F1 (c2)   GATA-1   C/EBPalpha   CHOP-10   Sox9   LHX3a/Lhx3a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): RNF32 promoter sequence
   Search Chromatin IP Primers for RNF32

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RNF32


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q36   Ensembl cytogenetic band:  7q36.3   HGNC cytogenetic band: 7q36

RNF32 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNF32 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P156433:  view genomic region     (about GC identifiers)

Start:
156,432,975 bp from pter      End:
156,469,824 bp from pter
Size:
36,850 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 155,662,737-155,699,209     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RNF32_HUMAN, Q9H0A6 (See protein sequence)
Recommended Name: RING finger protein 32  
Size: 362 amino acids; 41516 Da
Secondary accessions: Q6FIB3 Q6X7T4 Q8N6V8 Q8TDG0 Q96BM5 Q9Y6U1
Alternative splicing: 5 isoforms:  Q9H0A6-1   Q9H0A6-2   Q9H0A6-4   Q9H0A6-5   Q9H0A6-6   (No experimental confirmation available. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)

Explore the universe of human proteins at neXtProt for RNF32: NX_Q9H0A6

Explore proteomics data for RNF32 at MOPED


See RNF32 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (3 alternative transcripts): 
NP_001171925.1  NP_001171926.1  NP_112198.1  

ENSEMBL proteins: 
 ENSP00000385815   ENSP00000388088   ENSP00000315950   ENSP00000385285   ENSP00000308894  
 ENSP00000376497   ENSP00000376503   ENSP00000405588   ENSP00000376499   ENSP00000341185  
 ENSP00000376496  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
RNF: RING-type (C3HC4) zinc fingers

3 InterPro protein domains:
 IPR001841 Znf_RING
 IPR000048 IQ_motif_EF-hand-BS
 IPR013083 Znf_RING/FYVE/PHD

Graphical View of Domain Structure for InterPro Entry Q9H0A6

ProtoNet protein and cluster: Q9H0A6

1 Blocks protein domain: IPB001841 Zn-finger

UniProtKB/Swiss-Prot: RNF32_HUMAN, Q9H0A6
Similarity: Contains 1 IQ domain
Similarity: Contains 2 RING-type zinc fingers


Find genes that share domains with RNF32           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: RNF32_HUMAN, Q9H0A6
Function: May play a role in sperm formation

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding IPI--
GO:0008270zinc ion binding IEA--
GO:0046872metal ion binding ----
     
Find genes that share ontologies with RNF32           About GenesLikeMe


Phenotypes:
     2 GenomeRNAi human phenotypes for RNF32:
 Cells with protrusions  Decreased G3BP1 protein expres 

Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RNF32
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
RNF32_HUMAN, Q9H0A6: Cytoplasm
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
endosome4
cytosol2
nucleus2
extracellular1
mitochondrion1
plasma membrane1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005768endosome IDA--
GO:0016235aggresome IDA11890671

Find genes that share ontologies with RNF32           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RNF32
Interactions:

    Search GeneGlobe Interaction Network for RNF32

STRING Interaction Network Preview (showing 5 interactants - click image to see 15)

Selected Interacting proteins for RNF32 (Q9H0A61, 2, 3 ENSP000003159504) via UniProtKB, MINT, STRING, and/or I2D (see all 39)
InteractantInteraction Details
GeneCardExternal ID(s)
FBXL12Q9NXK81, 3EBI-724829,EBI-719790 I2D: score=1 
PRAM1Q96QH21, 3EBI-724829,EBI-2860740 I2D: score=1 
STAMBPL1Q96FJ01, 3EBI-724829,EBI-745021 I2D: score=1 
FIBPO434272, 3, ENSP000003445724MINT-63148 I2D: score=4 STRING: ENSP00000344572
UBE2KP610863, ENSP000002614274I2D: score=1 STRING: ENSP00000261427
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for RNF32



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for RNF32 gene (3 alternative transcripts): 
NM_001184996.1  NM_001184997.1  NM_030936.3  

Unigene Cluster for RNF32:

Ring finger protein 32
Hs.446194  [show with all ESTs]
Unigene Representative Sequence: BC015416
16 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000404282 ENST00000439609 ENST00000469382 ENST00000317955 ENST00000405335
ENST00000311822(uc003wmq.3) ENST00000392741(uc003wms.3 uc003wmt.3)
ENST00000392747(uc003wmu.3) ENST00000480011 ENST00000472537 ENST00000493999
ENST00000463028 ENST00000432459(uc003wmo.3 uc010lql.1 uc010lqm.3)
ENST00000392743(uc003wmr.3) ENST00000343665 ENST00000392740
miRNA
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Additional mRNA sequence: 

AF325690.1 AF441222.1 AK307316.1 AK314067.1 AL136874.1 BC015416.1 BC028120.1 BT007037.1 
CR533513.1 

12 DOTS entries:

DT.311225  DT.91670383  DT.108080  DT.452467  DT.95322906  DT.95370304  DT.101974717  DT.95101181 
DT.100021414  DT.121106962  DT.86846940  DT.106815 

Selected AceView cDNA sequences (see all 65):

CA396731 BX117234 AI190316 BE503002 CR599570 AF325690 AI472192 AL136874 
BC015416 BF508748 NM_030936 W86472 BX109196 AF441222 AW796606 BI461139 
BI460257 CR533513 BG772012 N34954 BI561658 AA009791 BF980783 BG717434 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for RNF32 (see all 7)    About this scheme

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9
SP1:                                      -                                             
SP2:                                                                                    
SP3:                    -     -     -     -     -                                       
SP4:                                      -     -                                       
SP5:                                -     -     -                                       


ECgene alternative splicing isoforms for RNF32

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RNF32 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GAAAAAGGAA
RNF32 Expression
About this image

RNF32 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

RNF32 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.446194

UniProtKB/Swiss-Prot: RNF32_HUMAN, Q9H0A6
Tissue specificity: Highly expressed in testis, less abundant in ovary

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In Situ
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF32

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for RNF32 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Rnf321 , 5 ring finger protein 321, 5 79.83(n)1
78.18(a)1
  5 (14.78 cM)5
568741  NM_021470.51  NP_067445.31 
 291959925 
chicken
(Gallus gallus)
Aves RNF321 ring finger protein 32 65.33(n)
60.57(a)
  770441  XM_001233775.2  XP_001233776.1 
lizard
(Anolis carolinensis)
Reptilia RNF326
ring finger protein 32
61(a)
1 ↔ 1
6(6278204-6298253)
tropical clawed frog
(Xenopus tropicalis)
Amphibia Str.131692 Transcribed sequence with moderate similarity to protein more 72.25(n)    BX726641.1 
zebrafish
(Danio rerio)
Actinopterygii Dr.188132 Transcribed sequence with weak similarity to protein more 69.07(n)    CB366582.1 


ENSEMBL Gene Tree for RNF32 (if available)
TreeFam Gene Tree for RNF32 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for RNF32 (see all 860)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs69473831,2
C,F--156435397(+) atcccA/Gtggca 3 -- int1 us2k11Minor allele frequency- G:0.08WA 118
rs1137320371,2
C--156435450(+) CTCACA/GTGCAC 3 -- int1 us2k10--------
rs1172189201,2
C,F--156435599(+) TAGAAG/AAAATA 3 -- int1 us2k11Minor allele frequency- A:0.07EA 120
rs1421646811,2
--156435605(+) AAATAC/TGTTCA 3 -- int1 us2k10--------
rs1156961901,2
F--156435627(+) TGCCAG/ATTCCT 3 -- int1 us2k11Minor allele frequency- A:0.01WA 118
rs1835591431,2
--156435708(+) CACCAC/TGTCCA 3 -- int1 ut510--------
rs1511833491,2
C--156435715(+) TCCAAA/GATCTA 3 -- int1 ut510--------
rs745879021,2
C,F--156435780(+) AACAAG/AAGTAA 3 -- int1 ut511Minor allele frequency- A:0.09WA 118
rs1880448441,2
--156435797(+) TGTGAA/GAAGAC 3 -- int10--------
rs1402070921,2
C--156435932(+) AAAGCA/GGTAGA 3 -- int10--------

HapMap Linkage Disequilibrium report for RNF32 (156432975 - 156469824 bp)

Structural Variations
     Database of Genomic Variants (DGV) 3 variations for RNF32:    About this table    
Variant IDTypeSubtypePubMed ID
nsv6020CNV Insertion18451855
nsv831198CNV Loss17160897
nsv525099CNV Gain19592680

Human Gene Mutation Database (HGMD): RNF32
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing RNF32
DNA2.0 Custom Variant and Variant Library Synthesis for RNF32

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610241    OMIM disorders: --

1 disease from the University of Copenhagen DISEASES database for RNF32:
Polydactyly

Find genes that share disorders with RNF32           About GenesLikeMe


Export disorders for RNF32 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for RNF32 gene, integrated from 10 sources (see all 17):
(articles sorted by number of sources associating them with RNF32)
    Utopia: connect your pdf to the dynamic
world of online information

  1. A double RING-H2 domain in RNF32, a gene expressed during sperm formation. (PubMed id 11890671)1, 2, 3 van Baren M.J.... Heutink P. (Biochem. Biophys. Res. Commun. 2002)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. The DNA sequence of human chromosome 7. (PubMed id 12853948)1, 2 Hillier L.W.... Wilson R.K. (Nature 2003)
  4. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2 Wiemann S.... Poustka A. (Genome Res. 2001)
  5. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
  6. Systematic analysis of dimeric E3-RING interactions reveals increased combinatorial complexity in human ubiquitination networks. (PubMed id 22493164)1 Woodsmith J....Sanderson C.M. (amp 2012)
  7. Interactome mapping suggests new mechanistic details underlying Alzheimer's disease. (PubMed id 21163940)1 Soler-LA^pez M....Aloy P. (Genome Res. 2011)
  8. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
  9. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (J. Biol. Chem. 2011)
  10. Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. (PubMed id 19549727)1 Markson G....Sanderson C.M. (Genome Res. 2009)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 140545 HGNC: 17118 AceView: RNF32 Ensembl:ENSG00000105982 euGenes: HUgn140545
ECgene: RNF32 H-InvDB: RNF32

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for RNF32 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for RNF32 gene:
Search GeneIP for patents involving RNF32

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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