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Aliases for RNF26 Gene

Aliases for RNF26 Gene

  • Ring Finger Protein 26 2 3 5
  • Ring Finger Protein With Leucine Zipper 2

External Ids for RNF26 Gene

Previous GeneCards Identifiers for RNF26 Gene

  • GC11P121204
  • GC11P120717
  • GC11P119239
  • GC11P118743
  • GC11P118742
  • GC11P118710
  • GC11P115145
  • GC11P119205

Summaries for RNF26 Gene

Entrez Gene Summary for RNF26 Gene

  • The protein encoded by this intronless gene contains a C3HC5 type of RING finger, a motif known to be involved in protein-DNA and protein-protein interactions. The expression of this gene was found to be upregulated in cancer cell lines derived from different types of cancer. [provided by RefSeq, Jul 2008]

GeneCards Summary for RNF26 Gene

RNF26 (Ring Finger Protein 26) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF26 Gene

Genomics for RNF26 Gene

Regulatory Elements for RNF26 Gene

Enhancers for RNF26 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNF26 on UCSC Golden Path with GeneCards custom track

Promoters for RNF26 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNF26 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNF26 Gene

Chromosome:
11
Start:
119,334,500 bp from pter
End:
119,337,314 bp from pter
Size:
2,815 bases
Orientation:
Plus strand

Genomic View for RNF26 Gene

Genes around RNF26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF26 Gene

Proteins for RNF26 Gene

  • Protein details for RNF26 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BY78-RNF26_HUMAN
    Recommended name:
    RING finger protein 26
    Protein Accession:
    Q9BY78
    Secondary Accessions:
    • Q542Y8

    Protein attributes for RNF26 Gene

    Size:
    433 amino acids
    Molecular mass:
    47737 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RNF26 Gene

Proteomics data for RNF26 Gene at MOPED

Post-translational modifications for RNF26 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RNF26 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RNF26 Gene

Domains & Families for RNF26 Gene

Gene Families for RNF26 Gene

Protein Domains for RNF26 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for RNF26 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BY78

UniProtKB/Swiss-Prot:

RNF26_HUMAN :
  • Contains 1 RING-type zinc finger.
Similarity:
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with RNF26: view

Function for RNF26 Gene

genes like me logo Genes that share phenotypes with RNF26: view

Animal Model Products

miRNA for RNF26 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNF26 Gene

Localization for RNF26 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNF26 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNF26 Gene COMPARTMENTS Subcellular localization image for RNF26 gene
Compartment Confidence
plasma membrane 3
cytosol 2
nucleus 2

Gene Ontology (GO) - Cellular Components for RNF26 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RNF26: view

Pathways & Interactions for RNF26 Gene

SuperPathways for RNF26 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF26 Gene

Drugs & Compounds for RNF26 Gene

No Compound Related Data Available

Transcripts for RNF26 Gene

mRNA/cDNA for RNF26 Gene

(1) REFSEQ mRNAs :
(85) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF26 Gene

No ASD Table

Relevant External Links for RNF26 Gene

GeneLoc Exon Structure for
RNF26
ECgene alternative splicing isoforms for
RNF26

Expression for RNF26 Gene

mRNA expression in normal human tissues for RNF26 Gene

Protein differential expression in normal tissues from HIPED for RNF26 Gene

This gene is overexpressed in Adrenal (46.7) and Heart (14.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RNF26 Gene



SOURCE GeneReport for Unigene cluster for RNF26 Gene Hs.524084

mRNA Expression by UniProt/SwissProt for RNF26 Gene

Q9BY78-RNF26_HUMAN
Tissue specificity: Ubiquitous. Up-regulated in several cancer cell lines.
genes like me logo Genes that share expression patterns with RNF26: view

Protein tissue co-expression partners for RNF26 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for RNF26 Gene

Orthologs for RNF26 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNF26 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RNF26 35
  • 88.76 (n)
  • 90.76 (a)
RNF26 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNF26 35
  • 89.22 (n)
  • 90.53 (a)
RNF26 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnf26 35
  • 84.43 (n)
  • 87.97 (a)
Rnf26 16
Gm9008 36
  • 87 (a)
OneToMany
Rnf26 36
  • 88 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia RNF26 35
  • 99.69 (n)
  • 99.77 (a)
RNF26 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rnf26 35
  • 83.73 (n)
  • 86.08 (a)
chicken
(Gallus gallus)
Aves RNF26 35
  • 60.42 (n)
  • 50.69 (a)
RNF26 36
  • 45 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rnf26 35
  • 49.44 (n)
  • 41.83 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.18835 35
zebrafish
(Danio rerio)
Actinopterygii Dr.18731 35
rnf26 35
  • 50.84 (n)
  • 39.7 (a)
rnf26 36
  • 37 (a)
OneToOne
Species with no ortholog for RNF26:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNF26 Gene

ENSEMBL:
Gene Tree for RNF26 (if available)
TreeFam:
Gene Tree for RNF26 (if available)

Paralogs for RNF26 Gene

No data available for Paralogs for RNF26 Gene

Variants for RNF26 Gene

Sequence variations from dbSNP and Humsavar for RNF26 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs2248853 -- 119,336,736(-) ACAGG(A/G)GTAAC utr-variant-3-prime
rs2248863 -- 119,336,631(-) AGCAT(C/T)GAAGG utr-variant-3-prime
rs11824001 -- 119,332,795(+) CACAG(C/T)ACGTT upstream-variant-2KB
rs61900003 -- 119,336,660(+) ACTAT(A/G)CAAGG utr-variant-3-prime
rs112562888 -- 119,332,759(+) GTGGA(A/C)AACTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNF26 Gene

Variant ID Type Subtype PubMed ID
nsv898417 CNV Loss 21882294
nsv898418 CNV Loss 21882294
nsv826103 CNV Gain 20364138
nsv826104 CNV Gain 20364138
nsv522705 CNV Loss 19592680

Variation tolerance for RNF26 Gene

Residual Variation Intolerance Score: 47% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.59; 30.73% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNF26 Gene

HapMap Linkage Disequilibrium report
RNF26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNF26 Gene

Disorders for RNF26 Gene

Relevant External Links for RNF26

Genetic Association Database (GAD)
RNF26
Human Genome Epidemiology (HuGE) Navigator
RNF26
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF26

No disorders were found for RNF26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF26 Gene

Publications for RNF26 Gene

  1. Molecular cloning and characterization of RNF26 on human chromosome 11q23 region, encoding a novel RING finger protein with leucine zipper. (PMID: 11352657) Katoh M. (Biochem. Biophys. Res. Commun. 2001) 2 3 4 23 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. RNF26 temporally regulates virus-triggered type I interferon induction by two distinct mechanisms. (PMID: 25254379) Qin Y. … Shu H.B. (PLoS Pathog. 2014) 3
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3
  5. Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. (PMID: 19549727) Markson G. … Sanderson C.M. (Genome Res. 2009) 3

Products for RNF26 Gene

Sources for RNF26 Gene

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