Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNF219-AS1 Gene

Subcategory (RNA class) for RNF219-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF219-AS1 Gene

  • RNF219 Antisense RNA 1 2 3 5
  • POU4F1 Antisense RNA 1 (Non-Protein Coding) 3
  • POU4F1 Antisense RNA 1 2
  • POU4F1-AS1 3

External Ids for RNF219-AS1 Gene

Previous HGNC Symbols for RNF219-AS1 Gene

  • POU4F1-AS1

Previous GeneCards Identifiers for RNF219-AS1 Gene

  • GC13P079154
  • GC13P078495
  • GC13P078497

Summaries for RNF219-AS1 Gene

GeneCards Summary for RNF219-AS1 Gene

RNF219-AS1 (RNF219 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF219-AS1 Gene

Genomics for RNF219-AS1 Gene

Genomic Location for RNF219-AS1 Gene

Chromosome:
13
Start:
77,919,689 bp from pter
End:
78,617,328 bp from pter
Size:
697,640 bases
Orientation:
Plus strand

Genomic View for RNF219-AS1 Gene

Genes around RNF219-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF219-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF219-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF219-AS1 Gene

No data available for Regulatory Elements for RNF219-AS1 Gene

Proteins for RNF219-AS1 Gene

Post-translational modifications for RNF219-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF219-AS1 Gene

Domains & Families for RNF219-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF219-AS1 Gene

Function for RNF219-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF219-AS1 Gene

Localization for RNF219-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF219-AS1 Gene

Pathways & Interactions for RNF219-AS1 Gene

SuperPathways for RNF219-AS1 Gene

No Data Available

Interacting Proteins for RNF219-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF219-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF219-AS1 Gene

Drugs & Compounds for RNF219-AS1 Gene

No Compound Related Data Available

Transcripts for RNF219-AS1 Gene

mRNA/cDNA for RNF219-AS1 Gene

(3) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF219-AS1 Gene

RNF219 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF219-AS1 Gene

No ASD Table

Relevant External Links for RNF219-AS1 Gene

GeneLoc Exon Structure for
RNF219-AS1
ECgene alternative splicing isoforms for
RNF219-AS1

Expression for RNF219-AS1 Gene

mRNA expression in normal human tissues for RNF219-AS1 Gene

SOURCE GeneReport for Unigene cluster for RNF219-AS1 Gene:

Hs.493062
genes like me logo Genes that share expression patterns with RNF219-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF219-AS1 Gene

Orthologs for RNF219-AS1 Gene

Evolution for RNF219-AS1 Gene

ENSEMBL:
Gene Tree for RNF219-AS1 (if available)
TreeFam:
Gene Tree for RNF219-AS1 (if available)

No data available for Orthologs for RNF219-AS1 Gene

Paralogs for RNF219-AS1 Gene

No data available for Paralogs for RNF219-AS1 Gene

Variants for RNF219-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF219-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs20408 -- 78,287,107(-) AGGCA(A/G)TTTTA intron-variant
rs944383 -- 78,100,255(-) AGGAC(A/G)TCTGC intron-variant
rs944385 -- 78,054,694(+) CACCT(A/C/T)GCCTA upstream-variant-2KB
rs959267 -- 78,266,877(+) AAGGA(A/G)GTGCA intron-variant
rs716837 -- 78,140,445(-) TATGA(C/T)CAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF219-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv114n21 CNV loss 19592680
dgv233n27 CNV gain 19166990
dgv234n27 CNV loss 19166990
dgv3264n54 CNV loss 21841781
dgv3265n54 CNV loss 21841781
dgv3266n54 CNV loss 21841781
dgv3267n54 CNV gain 21841781
dgv3268n54 CNV loss 21841781
dgv3269n54 CNV loss 21841781
dgv3270n54 CNV loss 21841781
dgv339n67 CNV gain 20364138
esv1532663 CNV insertion 17803354
esv2661205 CNV deletion 23128226
esv2666285 CNV deletion 23128226
esv2666370 CNV deletion 23128226
esv2672571 CNV deletion 23128226
esv2674249 CNV deletion 23128226
esv27337 CNV loss 19812545
esv2747699 CNV deletion 23290073
esv29902 CNV loss 19812545
esv3429274 CNV insertion 20981092
esv3447836 CNV insertion 20981092
esv3550742 CNV deletion 23714750
esv3550744 CNV deletion 23714750
esv3550745 CNV deletion 23714750
esv3580772 CNV loss 25503493
esv3580773 CNV loss 25503493
esv3632793 CNV loss 21293372
esv3632794 CNV loss 21293372
esv3632795 CNV loss 21293372
esv3632796 CNV gain 21293372
esv3632797 CNV loss 21293372
esv3632798 CNV loss 21293372
esv3892395 CNV loss 25118596
esv3892396 CNV gain 25118596
esv8901 CNV loss 19470904
esv996259 CNV insertion 20482838
nsv1070598 CNV deletion 25765185
nsv1094 CNV deletion 18451855
nsv1095 CNV insertion 18451855
nsv1096 CNV insertion 18451855
nsv1097 CNV insertion 18451855
nsv1110901 OTHER inversion 24896259
nsv1120038 CNV deletion 24896259
nsv1126347 CNV deletion 24896259
nsv1131061 CNV deletion 24896259
nsv1142833 CNV tandem duplication 24896259
nsv1143598 CNV deletion 24896259
nsv478036 CNV novel sequence insertion 20440878
nsv507714 OTHER sequence alteration 20534489
nsv510351 OTHER sequence alteration 20534489
nsv515727 CNV loss 19592680
nsv516992 CNV loss 19592680
nsv525629 CNV loss 19592680
nsv562396 CNV loss 21841781
nsv562405 CNV loss 21841781
nsv562410 CNV loss 21841781
nsv562413 CNV loss 21841781
nsv64597 CNV deletion 16902084
nsv826722 CNV loss 20364138
nsv826725 CNV gain 20364138
nsv826726 CNV gain 20364138
nsv832654 CNV gain 17160897
nsv983605 CNV duplication 23825009

Relevant External Links for RNF219-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF219-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF219-AS1 Gene

Disorders for RNF219-AS1 Gene

Relevant External Links for RNF219-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF219-AS1

No disorders were found for RNF219-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF219-AS1 Gene

Publications for RNF219-AS1 Gene

  1. Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. (PMID: 25436638) Malinowski J.R. … Crawford D.C. (PLoS ONE 2014) 3 65
  2. Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. (PMID: 24376456) Simino J. … Rao D.C. (Front Genet 2013) 3 65
  3. Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease. (PMID: 21116278) Furney S.J. … . (Mol. Psychiatry 2011) 3 65
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65

Products for RNF219-AS1 Gene

Sources for RNF219-AS1 Gene

Content
Loading form....