Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNF219 Gene

Aliases for RNF219 Gene

  • Ring Finger Protein 219 2 3 5
  • C13orf7 3 4
  • Chromosome 13 Open Reading Frame 7 2

External Ids for RNF219 Gene

Previous HGNC Symbols for RNF219 Gene

  • C13orf7

Previous GeneCards Identifiers for RNF219 Gene

  • GC13M078087
  • GC13M079188
  • GC13M059888

Summaries for RNF219 Gene

GeneCards Summary for RNF219 Gene

RNF219 (Ring Finger Protein 219) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF219 Gene

Genomics for RNF219 Gene

Regulatory Elements for RNF219 Gene

Enhancers for RNF219 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around RNF219 on UCSC Golden Path with GeneCards custom track

Promoters for RNF219 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNF219 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNF219 Gene

Chromosome:
13
Start:
78,614,286 bp from pter
End:
78,659,179 bp from pter
Size:
44,894 bases
Orientation:
Minus strand

Genomic View for RNF219 Gene

Genes around RNF219 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF219 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF219 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF219 Gene

Proteins for RNF219 Gene

  • Protein details for RNF219 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5W0B1-RN219_HUMAN
    Recommended name:
    RING finger protein 219
    Protein Accession:
    Q5W0B1
    Secondary Accessions:
    • B2RN99
    • Q8TBY2
    • Q9H0T2
    • Q9H8M0

    Protein attributes for RNF219 Gene

    Size:
    726 amino acids
    Molecular mass:
    81116 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14594.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BC028586; Type=Frameshift; Positions=614; Evidence={ECO:0000305}; Sequence=CAB66586.3; Type=Frameshift; Positions=614; Evidence={ECO:0000305};

neXtProt entry for RNF219 Gene

Post-translational modifications for RNF219 Gene

  • Ubiquitination at Lys 292 and Lys 569
  • Modification sites at PhosphoSitePlus

Other Protein References for RNF219 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RNF219 Gene

Domains & Families for RNF219 Gene

Gene Families for RNF219 Gene

Protein Domains for RNF219 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RNF219 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5W0B1

UniProtKB/Swiss-Prot:

RN219_HUMAN :
  • Contains 1 RING-type zinc finger.
Similarity:
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with RNF219: view

Function for RNF219 Gene

Gene Ontology (GO) - Molecular Function for RNF219 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with RNF219: view
genes like me logo Genes that share phenotypes with RNF219: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNF219 Gene

Localization for RNF219 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNF219 Gene COMPARTMENTS Subcellular localization image for RNF219 gene
Compartment Confidence
nucleus 3
cytoskeleton 2
cytosol 2
mitochondrion 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RNF219 Gene

Pathways & Interactions for RNF219 Gene

SuperPathways for RNF219 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF219 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF219 Gene

Drugs & Compounds for RNF219 Gene

No Compound Related Data Available

Transcripts for RNF219 Gene

mRNA/cDNA for RNF219 Gene

Unigene Clusters for RNF219 Gene

Ring finger protein 219:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF219 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b · 13c · 13d
SP1: - - - - - - - -
SP2: - - - - -
SP3: - - -
SP4: - -
SP5: - - - - -
SP6: - - - - - -
SP7: -
SP8: - -

Relevant External Links for RNF219 Gene

GeneLoc Exon Structure for
RNF219
ECgene alternative splicing isoforms for
RNF219

Expression for RNF219 Gene

mRNA expression in normal human tissues for RNF219 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RNF219 Gene

This gene is overexpressed in Liver, secretome (51.7) and Testis (9.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RNF219 Gene



NURSA nuclear receptor signaling pathways regulating expression of RNF219 Gene:

RNF219

SOURCE GeneReport for Unigene cluster for RNF219 Gene:

Hs.567576
genes like me logo Genes that share expression patterns with RNF219: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF219 Gene

Orthologs for RNF219 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNF219 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RNF219 34
  • 90.19 (n)
  • 90.24 (a)
RNF219 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNF219 34
  • 92.24 (n)
  • 92.89 (a)
RNF219 35
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnf219 34
  • 83.1 (n)
  • 81.16 (a)
Rnf219 16
Rnf219 35
  • 81 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RNF219 34
  • 99.68 (n)
  • 99.59 (a)
RNF219 35
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rnf219 34
  • 81.24 (n)
  • 79.94 (a)
oppossum
(Monodelphis domestica)
Mammalia RNF219 35
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RNF219 35
  • 68 (a)
OneToOne
chicken
(Gallus gallus)
Aves RNF219 34
  • 68.41 (n)
  • 60.68 (a)
RNF219 35
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RNF219 35
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rnf219 34
  • 57.32 (n)
  • 50.3 (a)
zebrafish
(Danio rerio)
Actinopterygii RNF219 35
  • 44 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4956 35
  • 36 (a)
OneToOne
Species where no ortholog for RNF219 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNF219 Gene

ENSEMBL:
Gene Tree for RNF219 (if available)
TreeFam:
Gene Tree for RNF219 (if available)

Paralogs for RNF219 Gene

No data available for Paralogs for RNF219 Gene

Variants for RNF219 Gene

Sequence variations from dbSNP and Humsavar for RNF219 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs981227 -- 78,618,181(-) AGGAG(A/T)TAAGG intron-variant
rs981228 -- 78,618,036(-) GTTCC(C/T)AGCCC intron-variant
rs1325637 -- 78,630,535(-) gccct(A/G)cccca intron-variant
rs1325638 -- 78,620,651(-) GAGCT(A/G)TTTGG intron-variant, reference, synonymous-codon
rs1325639 -- 78,619,165(-) CTTTG(A/G)TAGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF219 Gene

Variant ID Type Subtype PubMed ID
dgv234n27 CNV loss 19166990
dgv3268n54 CNV loss 21841781
dgv339n67 CNV gain 20364138
dgv340n67 CNV loss 20364138
esv2421781 CNV deletion 20811451
esv2667717 CNV deletion 23128226
esv2747700 CNV deletion 23290073
esv3580774 CNV loss 25503493
esv3580775 CNV loss 25503493
esv3632802 CNV loss 21293372
nsv1098 CNV insertion 18451855
nsv1142153 CNV tandem duplication 24896259
nsv1160140 CNV deletion 26073780
nsv442321 CNV loss 18776908
nsv514712 CNV loss 21397061
nsv517259 CNV loss 19592680

Variation tolerance for RNF219 Gene

Residual Variation Intolerance Score: 22.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.91; 35.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNF219 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF219

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNF219 Gene

Disorders for RNF219 Gene

Relevant External Links for RNF219

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF219

No disorders were found for RNF219 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF219 Gene

Publications for RNF219 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 65
  2. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4 65
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  4. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4 65
  5. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. (PMID: 25609649) Li X. … Chen J. (Mol. Syst. Biol. 2015) 3 65

Products for RNF219 Gene

Sources for RNF219 Gene

Content