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Aliases for RNF216P1 Gene

Aliases for RNF216P1 Gene

  • Ring Finger Protein 216 Pseudogene 1 2 3 5
  • RNF216L 3 4
  • Ring Finger Protein 216-Like 2
  • HCG2040556 3

External Ids for RNF216P1 Gene

Previous HGNC Symbols for RNF216P1 Gene

  • RNF216L

Previous GeneCards Identifiers for RNF216P1 Gene

  • GC07P005015

Summaries for RNF216P1 Gene

GeneCards Summary for RNF216P1 Gene

RNF216P1 (Ring Finger Protein 216 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF216P1 Gene

Genomics for RNF216P1 Gene

Regulatory Elements for RNF216P1 Gene

Enhancers for RNF216P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G004973 1.1 ENCODE 43.2 +0.5 468 2.0 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B RNF216P1 FOXK1 WIPI2 RBAK-RBAKDN
GH07G005687 1.9 FANTOM5 Ensembl ENCODE dbSUPER 19.4 +720.7 720742 15.0 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 YY1 TCF12 ELK1 ZNF143 FOS USP42 RNF216P1 ENSG00000198580 C7orf26 ENSG00000228010 ACTB ZNF316 FBXL18 MIR589 FSCN1
GH07G005416 1.9 FANTOM5 ENCODE dbSUPER 15.5 +450.0 449996 15.1 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 RNF216P1 USP42 TNRC18 FBXL18 ENSG00000188365
GH07G004737 1.9 FANTOM5 Ensembl ENCODE dbSUPER 13.1 -235.0 -234985 2.4 FOXA2 ATF1 CREB3L1 ARNT ZFP64 SIN3A ARID4B ZNF48 YY1 TCF12 AP5Z1 RNF216P1 PIR62911 GC07M004681
GH07G004774 1.1 ENCODE 22.2 -198.3 -198324 3.1 PKNOX1 CREB3L1 AGO1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B RNF216P1 AP5Z1 RADIL GC07P004785
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNF216P1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF216P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000208042 516 1800 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B

Genomic Location for RNF216P1 Gene

Chromosome:
7
Start:
4,973,985 bp from pter
End:
5,040,675 bp from pter
Size:
66,691 bases
Orientation:
Plus strand

Genomic View for RNF216P1 Gene

Genes around RNF216P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF216P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF216P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF216P1 Gene

Proteins for RNF216P1 Gene

  • Protein details for RNF216P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NUR6-R216L_HUMAN
    Recommended name:
    Putative protein RNF216-like
    Protein Accession:
    Q6NUR6
    Secondary Accessions:
    • B7Z8S6

    Protein attributes for RNF216P1 Gene

    Size:
    42 amino acids
    Molecular mass:
    5133 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAH14062.1; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305};

neXtProt entry for RNF216P1 Gene

Post-translational modifications for RNF216P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF216P1 Gene

Domains & Families for RNF216P1 Gene

Protein Domains for RNF216P1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RNF216P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF216P1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RNF216P1 Gene

Function for RNF216P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF216P1 Gene

Localization for RNF216P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF216P1 Gene

Pathways & Interactions for RNF216P1 Gene

SuperPathways for RNF216P1 Gene

No Data Available

Interacting Proteins for RNF216P1 Gene

Gene Ontology (GO) - Biological Process for RNF216P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF216P1 Gene

Transcripts for RNF216P1 Gene

mRNA/cDNA for RNF216P1 Gene

(10) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF216P1 Gene

Ring finger protein 216 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF216P1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b
SP1: - - -
SP2:
SP3: -
SP4: - - - - - - - -
SP5: -
SP6:

Relevant External Links for RNF216P1 Gene

GeneLoc Exon Structure for
RNF216P1
ECgene alternative splicing isoforms for
RNF216P1

Expression for RNF216P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF216P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNF216P1 Gene:

RNF216P1

SOURCE GeneReport for Unigene cluster for RNF216P1 Gene:

Hs.520636
genes like me logo Genes that share expression patterns with RNF216P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF216P1 Gene

Orthologs for RNF216P1 Gene

Evolution for RNF216P1 Gene

ENSEMBL:
Gene Tree for RNF216P1 (if available)
TreeFam:
Gene Tree for RNF216P1 (if available)

No data available for Orthologs for RNF216P1 Gene

Paralogs for RNF216P1 Gene

(1) SIMAP similar genes for RNF216P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RNF216P1: view

No data available for Paralogs for RNF216P1 Gene

Variants for RNF216P1 Gene

Sequence variations from dbSNP and Humsavar for RNF216P1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000017686 -- 4,987,907(+) CCCAC(C/T)CTGAC intron-variant
rs1000114252 -- 4,996,104(+) TCCAC(A/T)CAGCA intron-variant
rs1000137714 -- 4,993,830(+) CCAAT(A/G)GTTGG intron-variant
rs1000137994 -- 4,985,601(+) CAGGC(A/G)TCTTC intron-variant
rs1000168685 -- 4,993,997(+) CTTGA(C/T)CTCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF216P1 Gene

Variant ID Type Subtype PubMed ID
dgv3482n106 OTHER inversion 24896259
dgv6238n100 CNV loss 25217958
esv3611961 CNV loss 21293372
esv3611962 CNV loss 21293372
nsv1019120 CNV loss 25217958
nsv525289 CNV loss 19592680
nsv8033 CNV loss 18304495
nsv966749 CNV duplication 23825009
nsv981425 CNV duplication 23825009

Relevant External Links for RNF216P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF216P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF216P1 Gene

Disorders for RNF216P1 Gene

Relevant External Links for RNF216P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF216P1

No disorders were found for RNF216P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF216P1 Gene

Publications for RNF216P1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RNF216P1 Gene

Sources for RNF216P1 Gene

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