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Aliases for RNF216-IT1 Gene

Subcategory (RNA class) for RNF216-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for RNF216-IT1 Gene

  • RNF216 Intronic Transcript 1 2 3 5
  • RNF216 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for RNF216-IT1 Gene

Previous GeneCards Identifiers for RNF216-IT1 Gene

  • GC00U933839
  • GC07M005703

Summaries for RNF216-IT1 Gene

GeneCards Summary for RNF216-IT1 Gene

RNF216-IT1 (RNF216 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF216-IT1 Gene

Genomics for RNF216-IT1 Gene

Regulatory Elements for RNF216-IT1 Gene

Enhancers for RNF216-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F005676 1.4 FANTOM5 Ensembl ENCODE 0.8 +0.4 373 7.4 CTCF USF1 MAX RAD21 ZFHX2 ZNF316 POLR2A EED ZNF143 SMC3 ACTB FBXL18 FSCN1 MIR589 ZNF815P USP42 RNF216-IT1
GH07F005687 1.6 FANTOM5 Ensembl ENCODE 0.4 -14.2 -14166 15.2 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A BMI1 FEZF1 EGR1 FOS ENSG00000198580 ENSG00000228010 ACTB FBXL18 MIR589 FSCN1 RNF216 WIPI2 USP42 CCZ1
GH07F005665 1 Ensembl ENCODE 0.4 +15.0 14960 0.6 CTCF ESRRA SAP130 ARNT ARID4B BACH1 RAD21 ZKSCAN1 ZNF143 SMC3 ACTB FSCN1 FBXL18 MIR589 TNRC18 LOC100129484 RNF216-IT1
GH07F005702 1.1 Ensembl ENCODE 0.3 -23.5 -23480 2.6 ELF3 ARID4B RAD21 RFX5 ZNF143 FOS CREM MIXL1 ZNF654 REST C7orf26 ZNF316 RNF216P1 USP42 FBXL18 MIR589 ACTB FSCN1 MIR6874 RNF216-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNF216-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNF216-IT1 Gene

5,662,432 bp from pter
5,680,461 bp from pter
18,030 bases
Minus strand

Genomic View for RNF216-IT1 Gene

Genes around RNF216-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF216-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF216-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF216-IT1 Gene

Proteins for RNF216-IT1 Gene

Post-translational modifications for RNF216-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF216-IT1 Gene

Domains & Families for RNF216-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF216-IT1 Gene

Function for RNF216-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF216-IT1 Gene

Localization for RNF216-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF216-IT1 Gene

Pathways & Interactions for RNF216-IT1 Gene

SuperPathways for RNF216-IT1 Gene

No Data Available

Interacting Proteins for RNF216-IT1 Gene

Gene Ontology (GO) - Biological Process for RNF216-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNF216-IT1 Gene

Transcripts for RNF216-IT1 Gene

mRNA/cDNA for RNF216-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF216-IT1 Gene

RNF216 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF216-IT1 Gene

No ASD Table

Relevant External Links for RNF216-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNF216-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNF216-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF216-IT1 Gene

This gene is overexpressed in Esophagus - Muscularis (x6.2), Colon - Sigmoid (x4.6), and Esophagus - Gastroesophageal Junction (x4.3).

SOURCE GeneReport for Unigene cluster for RNF216-IT1 Gene:

genes like me logo Genes that share expression patterns with RNF216-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF216-IT1 Gene

Orthologs for RNF216-IT1 Gene

Evolution for RNF216-IT1 Gene

Gene Tree for RNF216-IT1 (if available)
Gene Tree for RNF216-IT1 (if available)

No data available for Orthologs for RNF216-IT1 Gene

Paralogs for RNF216-IT1 Gene

No data available for Paralogs for RNF216-IT1 Gene

Variants for RNF216-IT1 Gene

Sequence variations from dbSNP and Humsavar for RNF216-IT1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10230002 -- 5,678,922(+) GTTTA(C/T)CAGTT intron-variant
rs10233472 -- 5,672,250(+) ATCCA(A/G)AAGAG intron-variant
rs10263126 -- 5,671,721(+) aatct(C/T)ttcaa intron-variant
rs10272652 -- 5,675,195(+) GTCTG(C/T)TGTAT intron-variant
rs10278624 -- 5,671,819(+) aaaaa(A/G)aaaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF216-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv830890 CNV loss 17160897
nsv436904 CNV insertion 17901297
nsv1028652 CNV loss 25217958
esv3891028 CNV gain 25118596
dgv3482n106 OTHER inversion 24896259

Relevant External Links for RNF216-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF216-IT1 Gene

Disorders for RNF216-IT1 Gene

Relevant External Links for RNF216-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RNF216-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF216-IT1 Gene

Publications for RNF216-IT1 Gene

No publications were found for RNF216-IT1 Gene.

Products for RNF216-IT1 Gene

Sources for RNF216-IT1 Gene

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