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RNF216 Gene

protein-coding   GIFtS: 47

GC07M005627
ring finger protein 216
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 6.3.2.- 3
TRIAD3 1, 2, 3
U7I1 1, 2
UBCE7IP1 1, 2, 3
ZIN 1, 2, 3
Descriptions
Triad domain-containing protein 3 3
Ubiquitin-conjugating enzyme 7-interacting protein 1 3
Zinc finger protein inhibiting NF-kappa-B 3
ring finger protein 216 2, 3
ubiquitin conjugating enzyme 7 interacting protein 1 2
External Ids
HGNC: 216981
Entrez Gene: 544762
UniProtKB: Q9NWF93
Ensembl: ENSG000000112757
Search outside databases for aliases for RNF216 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for RNF216:
This gene encodes a cytoplasmic protein which specifically colocalizes and interacts with the
serine/threonine protein kinase, receptor-interacting protein (RIP). Zinc finger domains of the
encoded protein are required for its interaction with RIP and for inhibition of TNF- and
IL1-induced NF-kappa B activation pathways. The encoded protein may also function as an E3
ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes and
transfers it to substrates. Several alternatively spliced transcript variants have been described
for this locus but the full-length natures of only some are known. [provided by RefSeq]

UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9
Function: Isoform 1 acts as an E3 ubiquitin ligase, which accepts ubiquitin from specific E2
ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation by
the proteasome. Promotes degradation of TLR4 amd TLR9. Isoform 3/ZIN inhibits TNF and IL-1
mediated activation of NF-kappa-B. Promotes TNF and RIP mediated apoptosis

Gene Wiki entry for RNF216

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7p22.1   Ensembl cytogenetic band:  7p22.1   HGNC cytogenetic band: 7p22.1

RNF216 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M005627:     (about GC identifiers)

Start:
5,626,204 bp from pter
End:
5,787,818 bp from pter
Size:
161,615 bases
Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 5,706,023-5,867,637     
RefSeq DNA sequence:
NC_000007.12  NT_007819.16  NT_079592.2  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9 (See protein sequence)
Recommended Name: E3 ubiquitin-protein ligase RNF216  
Size: 866 amino acids; 99406 Da
Subunit: Interacts with UBE2L3 and to some extent with UBE2L6. Interacts with TLR3, TLR4, TLR5 and
TLR9. Isoform 3/ZIN binds RIPK1 and HIV VIF
Subcellular location: Cytoplasm
Secondary accessions: Q6Y691 Q75ML7 Q7Z2H7 Q7Z7C1 Q8NHW7 Q9NYT1
Alternative splicing: 3 isoforms:  Q9NWF9-2   Q9NWF9-1   Q9NWF9-3   

Post-translational modifications:

  • Auto-ubiquitinated1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (2 alternative transcripts): 
    NP_996994.1  NP_996999.1  


    ENSEMBL proteins: 
    ENSP00000374552 ENSP00000374550 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
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    Recombinant Proteins from Abcam (TRIAD3)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IDA11256614
    GO:0005737 cytoplasm IEA--
    About this table

    Antibodies for RNF216: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for RNF216
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (TRIAD3), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Novus Biologicals Antibody for RNF216

    Assays for RNF216: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    2 InterPro domains/families:
     IPR017907 Znf_RING_CS
     IPR002867 Znf_C6HC


       GeneDecks  RNF216 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9NWF9

    ProtoNet protein and cluster: Q9NWF9

    2 Blocks protein families:
    IPB001841 Zn-finger
    IPB002867 Zn-finger


    UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9
    Domain: The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme (By
    similarity)
    Similarity: Contains 1 IBR-type zinc finger
    Similarity: Contains 2 RING-type zinc fingers

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (RNF216)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_207111

                  Applied Biosystems Silencer® siRNAs for RNF216

                  Sigma-Aldrich siRNA and siRNA Panels for RNF216  
                         Sigma-Aldrich shRNA Panels and shRNA for RNF216  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_207111
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_207111
                                     untagged cDNA clones in CMV expression vector (see all 5): BC004947 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_207111

    UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9
    Function: Isoform 1 acts as an E3 ubiquitin ligase, which accepts ubiquitin from specific E2
    ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation by
    the proteasome. Promotes degradation of TLR4 amd TLR9. Isoform 3/ZIN inhibits TNF and IL-1
    mediated activation of NF-kappa-B. Promotes TNF and RIP mediated apoptosis
    Enzyme Number (IUBMB): EC 6.3.2.- 

    4 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI15367624
    GO:0008270 zinc ion binding IEA--
    GO:0016874 ligase activity IEA--
    GO:0046872 metal ion binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    2 Invitrogen iPath™ Online BioAtlas - Pathways for RNF216 (Maps provided by GeneGo):
     Caspase cascade activation by FADD and RIPK proteins
     TNFR1 signaling pathway

       GeneDecks  RNF216 for the pathways selected above  
    About GeneDecksing

    UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9
    Pathway: Protein modification; protein ubiquitination


    3 Interacting proteins for RNF216 (Q9NWF91, 2) via UniProtKB, MINT, and/or STRING

    InteractantInteraction Details
    GeneCardExternal ID(s)
    vif vif (xeno)P125041EBI-723337, EBI-779991
    RNF11Q9Y3C52MINT-60865
    RNF216Q9NWF92MINT-65649
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006915 apoptosis IEA--
    GO:0019941 modification-dependent protein catabolic process IEA--
    GO:0044419 interspecies interaction between organisms IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for RNF216

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (RNF216)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_207111

                  Sigma-Aldrich siRNA and siRNA Panels for RNF216  
                         Sigma-Aldrich shRNA Panels and shRNA for RNF216  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_207111  NM_207116  

    REFSEQ mRNAs for RNF216 gene (2 alternative transcripts): 

    NM_207111.2   NM_207116.1   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_207111  NM_207116  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_207111
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_207111
                                     untagged cDNA clones in CMV expression vector (see all 5): BC004947 

    Additional cDNA sequence: AK128551.1 

    17 DOTS entries:

    DT.100822416  DT.95119108  DT.101984488  DT.100822412  DT.97839502  DT.95094785  DT.121115404  DT.40129927 
    DT.101971951  DT.97811158  DT.100009747  DT.100717603  DT.75102250  DT.91757544  DT.92048653  DT.95226826 
    DT.121115379 

    24/329 AceView cDNA sequences (see all 329 ):

    BU785403 BQ212689 CR619754 AA746299 AI380539 AA912708 AI223829 BM817557 
    BE303029 AA732600 BE350347 NM_021163 BX097482 AI024759 F11246 BG941068 
    AA804883 AI018503 BU187037 CK429258 AI468075 AI916761 AA278262 AI024605 

    Unigene Clusters for RNF216:

    Ring finger protein 216
    Hs.487458  [show with all ESTs], Hs.689456  [show with all ESTs]
    Unigene Representative Sequences: NM_207111, AK128551


    GeneLoc Exon Structure

    5/10 Alternative Splicing Database (ASD) splice patterns (SP) for RNF216 (see all 10 )

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^
    SP1:                                      -                       -           -                                                                                 
    SP2:                                                                                                                    -     -                 -               
    SP3:                                                                                                                                                            
    SP4:        -     -     -                                                                                                                                       
    SP5:                                                                                                                                                            

    ExUns: 21a · 21b
    SP1:            
    SP2:            
    SP3:            
    SP4:            
    SP5:            

    About this scheme

    ECgene alternative splicing isoforms for RNF216

    2 Ensembl transcripts including schematic representations:
    ENST00000389902  ENST00000389900  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    RNF216 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for RNF216

    1 / 2

    11 probe-sets matching RNF216 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    61970_at2 U95-C 1 1.00 1.00 0.42 1.02 -- -- -- -- --

    54606_at2 U95-B 1 1.00 1.00 0.70 1.29 -- -- -- -- --

    37476_at2 U95-A 3 0.94 0.41 0.73 0.27 -- -- -- -- --

    37477_at2 U95-A 1 0.81 1.00 -0.60 0.21 -- -- -- -- --

    48511_at2 U95-B 1 0.69 1.00 0.87 1.48 -- -- -- -- --

    218426_s_at2 U133-A 1 1.00 1.00 -- -- -- -- -- -- --

    227065_at2 U133-B 1 1.00 1.00 -- -- -- -- -- -- --

    218425_at2 U133-A 1 1.00 1.00 -- -- -- -- -- -- --

    218426_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    227065_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    218425_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  RNF216 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene clusters: Hs.487458 Hs.689456

    UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9
    Tissue specificity: Ubiquitous, with the highest levels of expression in testis and peripheral
    blood leukocytes

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for RNF216 gene from 5/9 species (see all 9 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    RNF2161   -- ring finger protein 216 91.4(n)
    93.82(a)
    479760  XM_536887.2  XP_536887.2 
    chimpanzee
    (Pan troglodytes)
    RNF2161   -- ring finger protein 216 99.64(n)
    99.78(a)
    463248  XM_518955.2  XP_518955.2 
    cow
    (Bos taurus)
    RNF2161   -- ring finger protein 216 87.5(n)
    88.66(a)
    534455  XM_883230.2  XP_888323.1 
    rat
    (Rattus norvegicus)
    Rnf2161   -- ring finger protein 216 86.4(n)
    86.57(a)
    304294  XM_221922.4  XP_221922.4 
    mouse
    (Mus musculus)
    Rnf2161, 5 55
    ring finger protein 2161, 5 86.13(n)1
    86.99(a)1
    1080861  NM_080561.31  NP_542128.21 
     AF3610005  AI6474685  (see all 30)
    About this table        Species with no ortholog for RNF216

    ENSEMBL Gene Tree for RNF216
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for RNF216 gene
    RNF216L2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/956 NCBI SNPs in RNF216 are shown (see all 956 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 208)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 7 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs8524421,2
    A,C,F,H5626583(-) TCTTCA/TGACCA 2 -- ut315Minor allele frequency- T:0.13MN EU EA WA 600
    rs8524381,2
    A,C,F,H5627937(-) CTAGCG/CGTGCC 2 -- ut318Minor allele frequency- C:0.15MN EU EA WA NA 744
    rs119740541,2
    C,F,H5626714(+) CCCCCG/ATGCCT 2 -- ut313Minor allele frequency- A:0.07EA WA 296
    rs132413731,2
    C,F,H5789747(+) agtgtC/Tccttc 2 -- ng31 trp34Minor allele frequency- T:0.26EU EA WA 412
    rs8524431,2
    C,F,H5625911(-) TTCTTT/CTGCAG 2 -- ng514Minor allele frequency- C:0.01EU EA WA 410
    --
    rs8524391,2
    A,F,H5627554(-) gaggcG/Aggcgg 2 -- ut314Minor allele frequency- A:0.02EU EA WA 410
    --
    rs38577561,2
    C,F,H5767295(-) TTCAGC/TTCTTT 2 -- ut514Minor allele frequency- T:0.05EU EA WA 418
    rs8524411,2
    C,F,H5627212(-) TGCTAT/CGTCCT 2 -- ut319Minor allele frequency- C:0.15MN EU EA WA 1020
    --
    rs47247291,2
    F,H5788613(+) GGCTCA/GTGTCC 2 -- ng314Minor allele frequency- G:0.46EU EA WA 412
    --
    rs8524401,2
    A5627460(-) caggtA/Gctcag 2 -- ut313Minor allele frequency- G:0.00NA EA 252
    About this table

    HapMap Linkage Disequilibrium images for RNF216 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 609948

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/21 PubMed articles for RNF216 gene (see all 21 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 54476 HGNC: 21698 AceView: RBAK Ensembl:ENSG00000011275 euGenes: HUgn54476
    ECgene: RNF216 H-InvDB: RNF216
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for RNF216:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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