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Aliases & Descriptions for RNF216
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.3.2.- 3 TRIAD3 1 , 2 , 3 U7I1 1 , 2 UBCE7IP1 1 , 2 , 3 ZIN 1 , 2 , 3
Descriptions Triad domain-containing protein 3 3 Ubiquitin-conjugating enzyme 7-interacting protein 1 3 Zinc finger protein inhibiting NF-kappa-B 3 ring finger protein 216 2 , 3 ubiquitin conjugating enzyme 7 interacting protein 1 2
Search outside databases for aliases for RNF216 gene
Summaries for RNF216 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
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EntrezGene summary for RNF216 : This gene encodes a cytoplasmic protein which specifically colocalizes and interacts with theserine/threonine protein kinase, receptor-interacting protein (RIP). Zinc finger domains of theencoded protein are required for its interaction with RIP and for inhibition of TNF- andIL1-induced NF-kappa B activation pathways. The encoded protein may also function as an E3ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes andtransfers it to substrates. Several alternatively spliced transcript variants have been describedfor this locus but the full-length natures of only some are known. [provided by RefSeq] UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9 Function : Isoform 1 acts as an E3 ubiquitin ligase, which accepts ubiquitin from specific E2ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation bythe proteasome. Promotes degradation of TLR4 amd TLR9. Isoform 3/ZIN inhibits TNF and IL-1mediated activation of NF-kappa-B. Promotes TNF and RIP mediated apoptosis
Gene Wiki entry for RNF216
Genomic Location for RNF216
(According to
GeneLoc and/or
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and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7p22.1 Ensembl cytogenetic band: 7p22.1 HGNC cytogenetic band: 7p22.1 RNF216 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M005627:
(about GC identifiers )
Start:
5,626,204 bp from pter
End:
5,787,818 bp from pter
Size:
161,615 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 5,706,023-5,867,637
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for RNF216
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
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Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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Cell Signaling Technology ,
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UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9 (See
protein sequence )Recommended Name: E3 ubiquitin-protein ligase RNF216 Size : 866 amino acids; 99406 Da
Subunit : Interacts with UBE2L3 and to some extent with UBE2L6. Interacts with TLR3, TLR4, TLR5 andTLR9. Isoform 3/ZIN binds RIPK1 and HIV VIF
Subcellular location : Cytoplasm
Secondary accessions : Q6Y691 Q75ML7 Q7Z2H7 Q7Z7C1 Q8NHW7 Q9NYT1Alternative splicing : 3 isoforms : Q9NWF9-2 Q9NWF9-1 Q9NWF9-3
Post-translational modifications:
Auto-ubiquitinated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_996994.1 NP_996999.1 ENSEMBL proteins: ENSP00000374552 ENSP00000374550 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for RNF216: Assays for RNF216:
Protein
Domains/ Families for RNF216(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9NWF9 ProtoNet protein and cluster: Q9NWF9
2 Blocks protein families : IPB001841 Zn-finger IPB002867 Zn-finger UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9 Domain : The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme (Bysimilarity) Similarity : Contains 1 IBR-type zinc fingerSimilarity : Contains 2 RING-type zinc fingers
Gene Function for RNF216
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Sigma-Aldrich , RNAi from
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_207111 Applied Biosystems Silencer ® siRNAs for RNF216 Sigma-Aldrich siRNA and siRNA Panels for RNF216 Sigma-Aldrich shRNA Panels and shRNA for RNF216 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_207111                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_207111                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC004947  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_207111 UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9 Function : Isoform 1 acts as an E3 ubiquitin ligase, which accepts ubiquitin from specific E2ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation bythe proteasome. Promotes degradation of TLR4 amd TLR9. Isoform 3/ZIN inhibits TNF and IL-1mediated activation of NF-kappa-B. Promotes TNF and RIP mediated apoptosis Enzyme Number (IUBMB): EC 6.3.2.-
4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for RNF216
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9 Pathway : Protein modification; protein ubiquitination
3 Interacting proteins for RNF216 (Q9NWF9 1 , 2 ) via UniProtKB, MINT, and/or STRING About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006915 apoptosis
IEA -- GO:0019941 modification-dependent protein catabolic process
IEA -- GO:0044419 interspecies interaction between organisms
IEA --
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Drugs & Compounds for RNF216 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for RNF216(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_207111 Sigma-Aldrich siRNA and siRNA Panels for RNF216 Sigma-Aldrich shRNA Panels and shRNA for RNF216 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_207111 NM_207116
REFSEQ mRNAs for RNF216 gene (2 alternative transcripts): NM_207111.2 NM_207116.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_207111 NM_207116
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_207111                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_207111                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC004947  
Additional cDNA sequence: AK128551.1
17 DOTS entries : DT.100822416 DT.95119108 DT.101984488 DT.100822412 DT.97839502 DT.95094785 DT.121115404 DT.40129927 DT.101971951 DT.97811158 DT.100009747 DT.100717603 DT.75102250 DT.91757544 DT.92048653 DT.95226826 DT.121115379
24/329 AceView cDNA sequences (see all 329
):BU785403 BQ212689 CR619754 AA746299 AI380539 AA912708 AI223829 BM817557 BE303029 AA732600 BE350347 NM_021163 BX097482 AI024759 F11246 BG941068 AA804883 AI018503 BU187037 CK429258 AI468075 AI916761 AA278262 AI024605
Unigene Clusters for RNF216: Ring finger protein 216 Hs.487458 [show with all ESTs ] , Hs.689456 [show with all ESTs ] Unigene Representative Sequences: NM_207111 , AK128551 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for RNF216 (see all 10
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ SP1 :             -         -     -                             SP2 :                                       -   -       -       SP3 :                                                     SP4 :   -   -   -                                               SP5 :                                                    
ExUns: 21a · 21b SP1 :     SP2 :     SP3 :     SP4 :     SP5 :    
About this scheme ECgene alternative splicing isoforms for RNF216 2 Ensembl transcripts including schematic representations : ENST00000389902
ENST00000389900
Expression for RNF216
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RNF216 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RNF216 1 / 2
11 probe-sets matching RNF216 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene clusters: Hs.487458 Hs.689456 UniProtKB/Swiss-Prot: RN216_HUMAN, Q9NWF9 Tissue specificity : Ubiquitous, with the highest levels of expression in testis and peripheralblood leukocytes
Orthologs for RNF216
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RNF216 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for RNF216 ENSEMBL Gene Tree for RNF216 Paralogs for RNF216 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for RNF216 gene RNF216L 2
SNPs/Variants for RNF216 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RNF216 (up to first 250kb)
Disorders & Mutations for RNF216
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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OMIM: 609948
Medical News for RNF216 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for RNF216 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/21 PubMed articles for RNF216 gene (see all 21
): Ring finger protein ZIN interacts with human immunodeficiency virus type 1 Vif. (PubMed id 15367624) 1, 3, 4 Feng F.... Li P. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Triad3A, an E3 ubiquitin-protein ligase regulating Toll-like receptors. (PubMed id 15107846) 3, 4 Chuang T.-H. and Ulevitch R.J. (2004) The DNA sequence of human chromosome 7. (PubMed id 12853948) 3, 4 Hillier L.W.... Wilson R.K. (2003) A novel zinc finger protein interacts with receptor-interacting protein (RIP) and inhibits tumor necrosis factor (TNF)- and IL1- induced NF-kappa B activation. (PubMed id 11854271) 3, 4 Chen D.... Shu H.-B. (2002) Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross- validation of MS/MS and MS/MS/MS Spectra. (PubMed id 17924679) 4 Yu L.-R.... Veenstra T.D. (2007) The full-ORF clone resource of the German cDNA Consortium. (PubMed id 17974005) 4 Bechtel S....Schupp I. (2007) Triad3A regulates ubiquitination and proteasomal degradation of RIP1 following disruption of Hsp90 binding. (PubMed id 16968706) 3 Fearns C....Chuang T.H. (2006) The LIFEdb database in 2006. (PubMed id 16381901) 3 Mehrle A....Wiemann S. (2006)
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Genome Databases showing RNF216
(According to
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euGenes ,
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miRBase ,
ECgene ,
and/or
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Specialized Databases showing RNF216 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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