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Aliases for RNF215 Gene

Aliases for RNF215 Gene

  • Ring Finger Protein 215 2 3 5

External Ids for RNF215 Gene

Previous GeneCards Identifiers for RNF215 Gene

  • GC22M029104
  • GC22M030773
  • GC22M013736

Summaries for RNF215 Gene

GeneCards Summary for RNF215 Gene

RNF215 (Ring Finger Protein 215) is a Protein Coding gene. An important paralog of this gene is RNF43.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF215 Gene

Genomics for RNF215 Gene

Regulatory Elements for RNF215 Gene

Enhancers for RNF215 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G030300 1.8 FANTOM5 Ensembl ENCODE dbSUPER 30.7 +110.8 110786 20.9 HDGF PKNOX1 ARNT SIN3A ZBTB7B YY1 FOS ZNF263 JUNB REST RNF215 CASTOR1 CCDC157 SEC14L3 SEC14L2 MTMR3 LIF TBC1D10A SF3A1 ENSG00000248751
GH22G030322 1.6 FANTOM5 ENCODE dbSUPER 30.7 +94.9 94852 8.0 HDGF PKNOX1 WRNIP1 ARID4B SIN3A YY1 TCF12 GLIS2 SP3 SP5 RNF215 CCDC157 CASTOR1 SEC14L3 SF3A1 ENSG00000248751 SEC14L2 ENSG00000249590 LIF OSM
GH22G030287 1.3 ENCODE dbSUPER 30.2 +131.6 131614 5.0 HDGF ARNT AGO1 WRNIP1 ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF143 RNF215 CASTOR1 CCDC157 DUSP18 ENSG00000248751
GH22G030282 1.3 FANTOM5 Ensembl ENCODE dbSUPER 30.2 +138.8 138771 1.2 SCRT2 OSM RNF215 LIF LIF-AS1 SLC35E4 SEC14L2 ENSG00000249590 CASTOR1 MTMR3 DUSP18
GH22G030415 1.4 ENCODE dbSUPER 26.2 +0.3 332 11.6 MLX CREB3L1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 RNF215 TUG1 SEC14L3 CASTOR1 MORC2 SEC14L2 CCDC157 SEC14L6 SMTN ENSG00000272689
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNF215 on UCSC Golden Path with GeneCards custom track

Promoters for RNF215 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000145214 13 1001 HDGF FOXA2 ARNT ARID4B ZNF2 ZNF143 FOS SP3 SP5 REST

Genomic Location for RNF215 Gene

Chromosome:
22
Start:
30,368,811 bp from pter
End:
30,421,771 bp from pter
Size:
52,961 bases
Orientation:
Minus strand

Genomic View for RNF215 Gene

Genes around RNF215 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF215 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF215 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF215 Gene

Proteins for RNF215 Gene

  • Protein details for RNF215 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6U7-RN215_HUMAN
    Recommended name:
    RING finger protein 215
    Protein Accession:
    Q9Y6U7
    Secondary Accessions:
    • A6NEL1

    Protein attributes for RNF215 Gene

    Size:
    377 amino acids
    Molecular mass:
    41101 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAD43187.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for RNF215 Gene

Post-translational modifications for RNF215 Gene

  • Glycosylation at isoforms=186
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for RNF215 Gene

Domains & Families for RNF215 Gene

Gene Families for RNF215 Gene

Protein Domains for RNF215 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RNF215 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF215: view

No data available for UniProtKB/Swiss-Prot for RNF215 Gene

Function for RNF215 Gene

Gene Ontology (GO) - Molecular Function for RNF215 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with RNF215: view
genes like me logo Genes that share phenotypes with RNF215: view

Animal Model Products

CRISPR Products

miRNA for RNF215 Gene

miRTarBase miRNAs that target RNF215

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNF215 Gene

Localization for RNF215 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNF215 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RNF215 gene
Compartment Confidence
plasma membrane 2
extracellular 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for RNF215 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RNF215: view

Pathways & Interactions for RNF215 Gene

SuperPathways for RNF215 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF215 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF215 Gene

Drugs & Compounds for RNF215 Gene

No Compound Related Data Available

Transcripts for RNF215 Gene

mRNA/cDNA for RNF215 Gene

Unigene Clusters for RNF215 Gene

Ring finger protein 215:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF215 Gene

No ASD Table

Relevant External Links for RNF215 Gene

GeneLoc Exon Structure for
RNF215
ECgene alternative splicing isoforms for
RNF215

Expression for RNF215 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF215 Gene

Protein differential expression in normal tissues from HIPED for RNF215 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RNF215 Gene



Protein tissue co-expression partners for RNF215 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RNF215 Gene:

RNF215

SOURCE GeneReport for Unigene cluster for RNF215 Gene:

Hs.592194
genes like me logo Genes that share expression patterns with RNF215: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF215 Gene

Orthologs for RNF215 Gene

This gene was present in the common ancestor of animals.

Orthologs for RNF215 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNF215 34 35
  • 99.29 (n)
dog
(Canis familiaris)
Mammalia RNF215 34 35
  • 91.3 (n)
cow
(Bos Taurus)
Mammalia RNF215 34 35
  • 89.83 (n)
mouse
(Mus musculus)
Mammalia Rnf215 34 16 35
  • 86.33 (n)
rat
(Rattus norvegicus)
Mammalia Rnf215 34
  • 86.23 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RNF215 35
  • 60 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RNF215 35
  • 48 (a)
OneToOne
chicken
(Gallus gallus)
Aves RNF215 34 35
  • 67.64 (n)
lizard
(Anolis carolinensis)
Reptilia RNF215 35
  • 40 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:ch211-188g24.2 34
  • 58.49 (n)
RNF215 35
  • 37 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y47D3B.11 35
  • 14 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 34 (a)
OneToOne
Species where no ortholog for RNF215 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RNF215 Gene

ENSEMBL:
Gene Tree for RNF215 (if available)
TreeFam:
Gene Tree for RNF215 (if available)

Paralogs for RNF215 Gene

(3) SIMAP similar genes for RNF215 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RNF215: view

Variants for RNF215 Gene

Sequence variations from dbSNP and Humsavar for RNF215 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1001464615 -- 30,383,540(+) CCCTG(C/T)ACAGC intron-variant
rs1001552393 -- 30,384,213(+) CTCCT(A/G)TGGGG intron-variant
rs1001728427 -- 30,378,818(+) TTTAC(A/G)TCTTA downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs1001809165 -- 30,386,277(+) CCTTG(A/G)GGTCA intron-variant
rs1001860195 -- 30,380,713(+) CAGAG(A/C)CTCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF215 Gene

Variant ID Type Subtype PubMed ID
nsv1110864 OTHER inversion 24896259
nsv1136354 CNV deletion 24896259
nsv829171 CNV loss 20364138
nsv953067 CNV deletion 24416366

Variation tolerance for RNF215 Gene

Residual Variation Intolerance Score: 68.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.05; 50.49% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNF215 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF215

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNF215 Gene

Disorders for RNF215 Gene

Relevant External Links for RNF215

Genetic Association Database (GAD)
RNF215
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF215

No disorders were found for RNF215 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF215 Gene

Publications for RNF215 Gene

  1. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 4 64
  2. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for RNF215 Gene

Sources for RNF215 Gene

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