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Aliases for RNF215 Gene

Aliases for RNF215 Gene

  • Ring Finger Protein 215 2 3

External Ids for RNF215 Gene

Previous GeneCards Identifiers for RNF215 Gene

  • GC22M029104
  • GC22M030773
  • GC22M013736

Summaries for RNF215 Gene

GeneCards Summary for RNF215 Gene

RNF215 (Ring Finger Protein 215) is a Protein Coding gene. An important paralog of this gene is RNF167.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF215 Gene

Genomics for RNF215 Gene

Regulatory Elements for RNF215 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RNF215 Gene

Start:
30,377,846 bp from pter
End:
30,421,771 bp from pter
Size:
43,926 bases
Orientation:
Minus strand

Genomic View for RNF215 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNF215 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF215 Gene

Proteins for RNF215 Gene

  • Protein details for RNF215 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6U7-RN215_HUMAN
    Recommended name:
    RING finger protein 215
    Protein Accession:
    Q9Y6U7
    Secondary Accessions:
    • A6NEL1

    Protein attributes for RNF215 Gene

    Size:
    377 amino acids
    Molecular mass:
    41101 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAD43187.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for RNF215 Gene

Proteomics data for RNF215 Gene at MOPED

Post-translational modifications for RNF215 Gene

  • Glycosylation at Asn186
  • Modification sites at PhosphoSitePlus

Other Protein References for RNF215 Gene

No data available for DME Specific Peptides for RNF215 Gene

Domains for RNF215 Gene

Gene Families for RNF215 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers

Protein Domains for RNF215 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RNF215 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y6U7

UniProtKB/Swiss-Prot:

RN215_HUMAN :
  • Q9Y6U7
Similarity:
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with RNF215: view

Function for RNF215 Gene

Gene Ontology (GO) - Molecular Function for RNF215 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with RNF215: view

Animal Model Products

CRISPR Products

miRNA for RNF215 Gene

miRTarBase miRNAs that target RNF215

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RNF215 Gene

Localization for RNF215 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNF215 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNF215 Gene COMPARTMENTS Subcellular localization image for RNF215 gene
Compartment Confidence
plasma membrane 2
extracellular 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for RNF215 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RNF215: view

Pathways for RNF215 Gene

SuperPathways for RNF215 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for RNF215 Gene

None

No data available for Pathways by source for RNF215 Gene

Transcripts for RNF215 Gene

mRNA/cDNA for RNF215 Gene

Unigene Clusters for RNF215 Gene

Ring finger protein 215:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RNF215

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RNF215

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF215 Gene

No ASD Table

Relevant External Links for RNF215 Gene

GeneLoc Exon Structure for
RNF215
ECgene alternative splicing isoforms for
RNF215

Expression for RNF215 Gene

mRNA expression in normal human tissues for RNF215 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RNF215 Gene

SOURCE GeneReport for Unigene cluster for RNF215 Gene Hs.592194

genes like me logo Genes that share expressions with RNF215: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RNF215 Gene

Orthologs for RNF215 Gene

This gene was present in the common ancestor of animals.

Orthologs for RNF215 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNF215 35
  • 99.29 (n)
  • 99.29 (a)
RNF215 36
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RNF215 35
  • 89.83 (n)
  • 93.4 (a)
RNF215 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNF215 35
  • 91.3 (n)
  • 94.78 (a)
RNF215 36
  • 66 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnf215 35
  • 86.33 (n)
  • 90.86 (a)
Rnf215 16
Rnf215 36
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RNF215 36
  • 48 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RNF215 36
  • 60 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rnf215 35
  • 86.23 (n)
  • 92.04 (a)
chicken
(Gallus gallus)
Aves RNF215 35
  • 67.64 (n)
  • 57.82 (a)
RNF215 36
  • 44 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RNF215 36
  • 40 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii RNF215 36
  • 37 (a)
OneToOne
si:ch211-188g24.2 35
  • 58.49 (n)
  • 50.57 (a)
worm
(Caenorhabditis elegans)
Secernentea Y47D3B.11 36
  • 14 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
OneToOne
Species with no ortholog for RNF215:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RNF215 Gene

ENSEMBL:
Gene Tree for RNF215 (if available)
TreeFam:
Gene Tree for RNF215 (if available)

Paralogs for RNF215 Gene

Selected SIMAP similar genes for RNF215 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RNF215: view

Variants for RNF215 Gene

Sequence variations from dbSNP and Humsavar for RNF215 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs722298 -- 30,381,540(+) GGTGC(A/G)CCTCT intron-variant
rs737813 -- 30,380,861(+) CCCCC(G/T)GTACG intron-variant
rs757870 -- 30,380,430(+) GGACA(C/T)GGGGC intron-variant
rs1990268 -- 30,381,892(+) CAAGC(C/T)CCAGG intron-variant
rs5749088 - 30,380,106(+) CTCAG(C/T)ACCCG missense, reference

Structural Variations from Database of Genomic Variants (DGV) for RNF215 Gene

Variant ID Type Subtype PubMed ID
nsv829171 CNV Loss 20364138
nsv914970 CNV Loss 21882294

Relevant External Links for RNF215 Gene

HapMap Linkage Disequilibrium report
RNF215

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNF215 Gene

Disorders for RNF215 Gene

Relevant External Links for RNF215

Genetic Association Database (GAD)
RNF215
genes like me logo Genes that share disorders with RNF215: view

No data available for UniProtKB/Swiss-Prot for RNF215 Gene

Publications for RNF215 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  2. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 4

Products for RNF215 Gene

Sources for RNF215 Gene

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