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Aliases for RNF208 Gene

Aliases for RNF208 Gene

  • Ring Finger Protein 208 2 3 5

External Ids for RNF208 Gene

Previous GeneCards Identifiers for RNF208 Gene

  • GC09P9S0001
  • GC09M139237
  • GC09M140114
  • GC09M109574

Summaries for RNF208 Gene

GeneCards Summary for RNF208 Gene

RNF208 (Ring Finger Protein 208) is a Protein Coding gene. GO annotations related to this gene include ubiquitin-protein transferase activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF208 Gene

Genomics for RNF208 Gene

Regulatory Elements for RNF208 Gene

Enhancers for RNF208 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around RNF208 on UCSC Golden Path with GeneCards custom track

Promoters for RNF208 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for RNF208 Gene

Chromosome:
9
Start:
137,220,247 bp from pter
End:
137,221,581 bp from pter
Size:
1,335 bases
Orientation:
Minus strand

Genomic View for RNF208 Gene

Genes around RNF208 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF208 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF208 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF208 Gene

Proteins for RNF208 Gene

  • Protein details for RNF208 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0X6-RN208_HUMAN
    Recommended name:
    RING finger protein 208
    Protein Accession:
    Q9H0X6
    Secondary Accessions:
    • A2BFA0

    Protein attributes for RNF208 Gene

    Size:
    261 amino acids
    Molecular mass:
    27964 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH16958.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH16958.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part.; Evidence={ECO:0000305}; Sequence=AAL16809.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAB66475.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for RNF208 Gene

Post-translational modifications for RNF208 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RNF208 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RNF208 Gene

Domains & Families for RNF208 Gene

Gene Families for RNF208 Gene

Protein Domains for RNF208 Gene

Suggested Antigen Peptide Sequences for RNF208 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H0X6

UniProtKB/Swiss-Prot:

RN208_HUMAN :
  • Contains 1 RING-type zinc finger.
Similarity:
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with RNF208: view

Function for RNF208 Gene

Gene Ontology (GO) - Molecular Function for RNF208 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004842 ubiquitin-protein transferase activity IDA 24105792
GO:0005515 protein binding IPI 16189514
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with RNF208: view

Phenotypes for RNF208 Gene

genes like me logo Genes that share phenotypes with RNF208: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF208 Gene

Localization for RNF208 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNF208 Gene COMPARTMENTS Subcellular localization image for RNF208 gene
Compartment Confidence
nucleus 5
cytosol 3
peroxisome 1

Gene Ontology (GO) - Cellular Components for RNF208 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with RNF208: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RNF208 Gene

Pathways & Interactions for RNF208 Gene

SuperPathways for RNF208 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF208 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051865 protein autoubiquitination IDA 24105792
genes like me logo Genes that share ontologies with RNF208: view

No data available for Pathways by source and SIGNOR curated interactions for RNF208 Gene

Drugs & Compounds for RNF208 Gene

No Compound Related Data Available

Transcripts for RNF208 Gene

mRNA/cDNA for RNF208 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF208 Gene

Ring finger protein 208:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF208 Gene

No ASD Table

Relevant External Links for RNF208 Gene

GeneLoc Exon Structure for
RNF208
ECgene alternative splicing isoforms for
RNF208

Expression for RNF208 Gene

mRNA expression in normal human tissues for RNF208 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RNF208 Gene

This gene is overexpressed in Brain - Cortex (x5.3) and Brain - Frontal Cortex (BA9) (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RNF208 Gene:

RNF208

SOURCE GeneReport for Unigene cluster for RNF208 Gene:

Hs.512767
genes like me logo Genes that share expression patterns with RNF208: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF208 Gene

Orthologs for RNF208 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNF208 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RNF208 34
  • 88.89 (n)
  • 90.8 (a)
RNF208 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNF208 34
  • 88.51 (n)
  • 93.1 (a)
RNF208 35
  • 63 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnf208 34
  • 87.61 (n)
  • 94.25 (a)
Rnf208 16
Rnf208 35
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RNF208 34
  • 99.27 (n)
  • 100 (a)
rat
(Rattus norvegicus)
Mammalia Rnf208 34
  • 87.36 (n)
  • 94.25 (a)
oppossum
(Monodelphis domestica)
Mammalia RNF208 35
  • 91 (a)
OneToOne
chicken
(Gallus gallus)
Aves RNF208 34
  • 73.69 (n)
  • 72.73 (a)
RNF208 35
  • 67 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:dkey-106l3.6 34
  • 62.25 (n)
  • 60.26 (a)
RNF208 35
  • 58 (a)
OneToOne
Species where no ortholog for RNF208 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNF208 Gene

ENSEMBL:
Gene Tree for RNF208 (if available)
TreeFam:
Gene Tree for RNF208 (if available)

Paralogs for RNF208 Gene

No data available for Paralogs for RNF208 Gene

Variants for RNF208 Gene

Sequence variations from dbSNP and Humsavar for RNF208 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs117537816 -- 137,221,888(+) TCCCC(A/G)GTCCC upstream-variant-2KB
rs138418399 -- 137,221,287(+) CAGGG(C/T)AGCAT utr-variant-5-prime
rs138917279 -- 137,220,530(+) CAGCC(C/G)CCCAC reference, missense
rs139163961 -- 137,220,589(+) ATGGA(A/C/T)GTGTT reference, synonymous-codon
rs201582442 -- 137,220,812(+) CCGCC(A/G)AAGAA reference, missense

Structural Variations from Database of Genomic Variants (DGV) for RNF208 Gene

Variant ID Type Subtype PubMed ID
dgv13009n54 CNV loss 21841781
dgv13010n54 CNV loss 21841781
esv2422220 CNV deletion 17116639
nsv1126931 CNV deletion 24896259
nsv1161918 CNV duplication 26073780
nsv524322 CNV loss 19592680
nsv616007 CNV loss 21841781
nsv616012 CNV loss 21841781
nsv951207 CNV deletion 24416366

Variation tolerance for RNF208 Gene

Residual Variation Intolerance Score: 68% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.69; 14.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNF208 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF208

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNF208 Gene

Disorders for RNF208 Gene

Relevant External Links for RNF208

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF208

No disorders were found for RNF208 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF208 Gene

Publications for RNF208 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 65
  2. Protein microarray characterization of the S-nitrosoproteome. (PMID: 24105792) Lee Y.I. … Dawson T.M. (Mol. Cell Proteomics 2014) 3 65
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 65
  4. Systematic analysis of dimeric E3-RING interactions reveals increased combinatorial complexity in human ubiquitination networks. (PMID: 22493164) Woodsmith J. … Sanderson C.M. (Mol. Cell Proteomics 2012) 3 65
  5. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PMID: 19690332) Mayya V. … Han D.K. (Sci. Signal. 2009) 4 65

Products for RNF208 Gene

Sources for RNF208 Gene

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