RNF182 Gene
protein-coding GIFtS : 48
GCID: GC06 P013924
ring finger protein 182
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Aliasesfor RNF182 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Ring Finger Protein 182 1 2 3 MGC339931 E3 Ubiquitin-Protein Ligase RNF1822 EC 6.3.2.-3
Export aliases for RNF182 gene to outside databases Previous GC identifer: GC06P014034
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Summariesfor RNF182 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2 Function : E3 ubiquitin-protein ligase that mediates the ubiquitination of ATP6V0C and targets it to degradation via theubiquitin-proteasome pathway
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Genomic Viewsfor RNF182 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000006.11 NC_018917.1 NT_007592.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RNF182 gene promoter: c-Fos AP-1 Olf-1 CUTL1 NF-AT NF-AT4 NF-AT2 NF-AT3 c-Jun NF-AT1 Other transcription factors Search SABiosciences Chromatin IP Primers for RNF182 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNF182
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p23 Ensembl cytogenetic band: 6p23 HGNC cytogenetic band: 6p23 RNF182 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06P013924: view genomic region
(about GC identifiers )
Start:
13,924,677 bp from pter
End:
13,980,533 bp from pter
Size:
55,857 bases
Orientation:
plus strand
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Proteinsfor RNF182 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2 (See
protein sequence )Recommended Name: E3 ubiquitin-protein ligase RNF182 Size : 247 amino acids; 27402 Da
Subunit : Interacts with ATP6V0C
Subcellular location : Membrane; Multi-pass membrane protein (Potential). Cytoplasm
Secondary accessions : B2RDG2 Q8NBG3Explore the universe of human proteins at neXtProt for RNF182: NX_Q8N6D2 RNF182 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (4 alternative transcripts):
NP_001158504.1 NP_001158505.1 NP_001158506.1 NP_689950.1 ENSEMBL proteins: ENSP00000417500 ENSP00000420465 ENSP00000419329 ENSP00000417514 ENSP00000418717 ENSP00000443228 ENSP00000442021 ENSP00000441271 Reactome Protein details: Q8N6D2 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
RNF182 for ontologies About GeneDecksing RNF182 Antibody Products: Assay Products for RNF182:
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Protein
Domains / Familiesfor RNF182 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RNF182 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8N6D2 ProtoNet protein and cluster: Q8N6D2
1 Blocks protein family : IPB001841 Zn-finger UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2 Domain : The RING-type zinc finger domain is required for E3 ligase activity (By similarity)Similarity : Contains 1 RING-type zinc finger
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Functionfor RNF182 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2 Function : E3 ubiquitin-protein ligase that mediates the ubiquitination of ATP6V0C and targets it to degradation via theubiquitin-proteasome pathway Enzyme Number (IUBMB): EC 6.3.2.- 1
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNF182 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNF182 (see all 5 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): RNF182 (NM_152737 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RNF182 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RNF182
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF182
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
RNF182 for ontologies About GeneDecksing 2 GenomeRNAi human phenotypes for RNF182 :
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Pathways & Interactionsfor RNF182 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Antigen processing: Ubiquitination & Proteasome degradation 2 Immune System
Pathway sources See GeneCards unified pathways Show all pathways 5
Reactome Pathways for RNF182 UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2 Pathway : Protein modification; protein ubiquitination
RNF182 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNF182 STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)4 Interacting proteins for RNF182 (Q8N6D2 3 ENSP00000420465 4 ) via UniProtKB, MINT, STRING , and/or I2D
About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
RNF182 for ontologies About GeneDecksing
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Drugs & Compoundsfor RNF182 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RNF182 Search CenterWatch for drugs/clinical trials and news about RNF182 / RN182
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Transcriptsfor RNF182 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
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microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for RNF182 gene (4 alternative transcripts): NM_001165032.1 NM_001165033.1 NM_001165034.1 NM_152737.3 Unigene Cluster for RNF182:
Ring finger protein 182 Hs.111164 [show with all ESTs ] Unigene Representative Sequence: NM_001165032 8 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000488763 ENST00000488300 (uc003nbe.3 uc003nbf.3 ) ENST00000420478 ENST00000471906 ENST00000423553 ENST00000537663 (uc021ylw.1 ) ENST00000544682 (uc021ylx.1 )ENST00000537388 (uc003nbg.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNF182 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNF182 (see all 5 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): RNF182 (NM_152737 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RNF182 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RNF182
Additional cDNA sequence: AK090576.1 AK098091.1 AK315528.1 BC030666.1 BC050030.1
6 DOTS entries : DT.100748263 DT.401959
DT.95265259 DT.430538 DT.121394263 DT.121394264 24/42 AceView cDNA sequences (see all 42 ):
BU688477 AI361053 AA599692 BF196765 AI743910 BU678155 AI370991 BE504513 NM_152737 AK098091 BM546508 BC030666 AW731636 BC050030 BU945333 AI884906 AX746519 BQ187566 BI552264 AK090576 AW054717 AI912104 BF129987 BI544248 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for RNF182 About this scheme ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c SP1 :                   SP2 :   -   -   -   -           SP3 :         -           SP4 :         -          
ECgene alternative splicing isoforms for RNF182
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Expression for RNF182 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RNF182 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTATTGAATG
About this image RNF182 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See RNF182 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RNF182 SOURCE GeneReport for Unigene cluster: Hs.111164 UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2 Tissue specificity : Up-regulated in neuronal cells subjected to cell death-inducing injuries, such as oxygen andglucose deprivation (at protein level). Could be up-regulated in Alzheimer disease brains SABiosciences Custom PCR Arrays for RNF182 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RNF182Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat RNF182 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RNF182 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RNF182 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF182
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Orthologsfor RNF182 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for RNF182 gene from 5/11 species (see all 11 ) About this table
ENSEMBL Gene Tree for RNF182 (if available)TreeFam Gene Tree for RNF182 (if available)
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Paralogsfor RNF182 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RNF182 gene RNF152 2 1 SIMAP similar gene for RNF182 using alignment to 5 protein entries: RN182_HUMAN (see all proteins ):RNF152
RNF182 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for RNF182 PGOHUM00000240530
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Genomic Variantsfor RNF182 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 6 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RNF182 (13924677 - 13980533 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for RNF182: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RNF182
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Disorders
/ Diseasesfor RNF182 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RNF182 for disorders About GeneDecksing 2 diseases for RNF182 : About MalaCards alzheimer's disease neuronitis Export disorders for RNF182 gene to outside databases
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Publicationsfor RNF182 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RNF182 gene integrated from 9 sources : (articles sorted by number of sources associating them with RNF182) Utopia : connect your pdf to the dynamic world of online information
A novel brain-enriched E3 ubiquitin ligase RNF182 is up regulated in the brains of Alzheimer's patients and targets ATP6V0C for degr adation. (PubMed id 18298843) 1 , 2 Liu Q.Y....Liu R. (2008) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. (PubMed id 19690564) 1 van Wijk S.J....Timmers H.T. (2009) Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201) 1 Abdelmohsen K....Gorospe M. (2009) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974) 2 Sjoeblom T.... Velculescu V.E. (2006) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 2 Mungall A.J.... Beck S. (2003)
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External Searches for RNF182 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RNF182 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RNF182 gene
(According to HUGE )
About This Section --
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Specialized Databases showing RNF182 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for RNF182 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for RNF182 gene: Search GeneIP for patents involving RNF182 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RNF182 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for RNF182 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RNF182 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RNF182 OriGene Protein Over-expression Lysate for RNF182 Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for RNF182 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNF182 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNF182 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNF182 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RNF182 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNF182 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RNF182 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RNF182 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RNF182
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RNF182 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF182
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RNF182
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Aliases for RNF182
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