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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RNF182 Gene

protein-coding   GIFtS: 48
GCID: GC06P013924

ring finger protein 182

 Explore 2 diseases affiliated with
RNF182 via our new
 Human Malady Compendium 
Biological research products
for RNF182
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ring Finger Protein 1821 2 3
MGC339931
E3 Ubiquitin-Protein Ligase RNF1822
EC 6.3.2.-3

External Ids:    HGNC: 285221   Entrez Gene: 2216872   Ensembl: ENSG000001805377   UniProtKB: Q8N6D23   

Export aliases for RNF182 gene to outside databases

Previous GC identifer: GC06P014034


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2
Function: E3 ubiquitin-protein ligase that mediates the ubiquitination of ATP6V0C and targets it to degradation via the
ubiquitin-proteasome pathway




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.1  NT_007592.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RNF182 gene promoter:
         c-Fos   AP-1   Olf-1   CUTL1   NF-AT   NF-AT4   NF-AT2   NF-AT3   c-Jun   NF-AT1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRNF182 promoter sequence
   Search SABiosciences Chromatin IP Primers for RNF182

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNF182


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p23   Ensembl cytogenetic band:  6p23   HGNC cytogenetic band: 6p23

RNF182 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNF182 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P013924:  view genomic region     (about GC identifiers)

Start:
13,924,677 bp from pter      End:
13,980,533 bp from pter
Size:
55,857 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2 (See protein sequence)
Recommended Name: E3 ubiquitin-protein ligase RNF182  
Size: 247 amino acids; 27402 Da
Subunit: Interacts with ATP6V0C
Subcellular location: Membrane; Multi-pass membrane protein (Potential). Cytoplasm
Secondary accessions: B2RDG2 Q8NBG3

Explore the universe of human proteins at neXtProt for RNF182: NX_Q8N6D2

RNF182 Protein expression data from MOPED and PaxDb:    About this image 

Estimated protein expression log10 (pmol).

REFSEQ proteins (4 alternative transcripts): 
NP_001158504.1  NP_001158505.1  NP_001158506.1  NP_689950.1  

ENSEMBL proteins: 
 ENSP00000417500   ENSP00000420465   ENSP00000419329   ENSP00000417514   ENSP00000418717  
 ENSP00000443228   ENSP00000442021   ENSP00000441271  
Reactome Protein details: Q8N6D2
Human Recombinant Protein Products: 
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Novus Biologicals RNF182 Proteins
Novus Biologicals RNF182 Lysates
Browse Sino Biological Recombinant Proteins
Browse ProSpec Recombinant Proteins
Uscn Proteins for RNF182

Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IDA18298843
GO:0016021integral to membrane IEA--
GO:0043231intracellular membrane-bounded organelle IDA--


RNF182 for ontologies           About GeneDecksing



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Uscn ELISAs and CLIAs for RNF182


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

RNF182 for domains           About GeneDecksing

3 InterPro domains/families:
 IPR017907 Znf_RING_CS
 IPR001841 Znf_RING
 IPR013083 Znf_RING/FYVE/PHD

Graphical View of Domain Structure for InterPro Entry Q8N6D2

ProtoNet protein and cluster: Q8N6D2

1 Blocks protein family: IPB001841 Zn-finger

UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2
Domain: The RING-type zinc finger domain is required for E3 ligase activity (By similarity)
Similarity: Contains 1 RING-type zinc finger


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

     UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2
Function: E3 ubiquitin-protein ligase that mediates the ubiquitination of ATP6V0C and targets it to degradation via the
ubiquitin-proteasome pathway

Enzyme Number (IUBMB): EC 6.3.2.-1

miRNA
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8/20 QIAGEN miScript miRNA Assays for microRNAs that regulate RNF182 (see all 20):
hsa-miR-875-3p hsa-miR-181c hsa-miR-330-5p hsa-miR-4272 hsa-miR-128 hsa-miR-605 hsa-miR-410 hsa-miR-326
SwitchGear 3'UTR luciferase reporter plasmidRNF182 3' UTR sequence
Inhib. RNA
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OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RNF182 (see all 7)
OriGene shRNA RFP: RNF182
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QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNF182

Gene Editing
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DNA2.0 Custom Protein Engineering Service for RNF182

Clone
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OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RNF182 (see all 6)
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Cell Line
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Search LifeMap BioReagents cell lines for RNF182

In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF182

Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004842ubiquitin-protein ligase activity IDA18298843
GO:0005515protein binding IPI18298843
GO:0008270zinc ion binding IEA--


RNF182 for ontologies           About GeneDecksing


2 GenomeRNAi human phenotypes for RNF182:
 Cell cycle / mitosis defect  Elongated cells 


(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways  About this table 
See pathways by source

Super-pathwaycontained gene-specific pathways
1Antigen processing: Ubiquitination & Proteasome degradation
Antigen processing: Ubiquitination & Proteasome degradation1.00
Polyubiquitination of substrate0.75
Class I MHC mediated antigen processing & presentation0.83
2Immune System
Immune System1.00
Adaptive Immune System0.59

Pathway sources
See GeneCards unified pathways
Show all pathways


5        Reactome Pathways for RNF182
    Antigen processing: Ubiquitination & Proteasome degradation
Polyubiquitination of substrate
Adaptive Immune System
Class I MHC mediated antigen processing & presentation
Immune System


UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2
Pathway: Protein modification; protein ubiquitination


RNF182 for pathways           About GeneDecksing

Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNF182

STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

4 Interacting proteins for RNF182 (Q8N6D23 ENSP000004204654) via UniProtKB, MINT, STRING, and/or I2D

InteractantInteraction Details
GeneCardExternal ID(s)
UBE2NP610883, ENSP000003161764I2D: score=2 STRING: ENSP00000316176
ATP6V0CENSP000003297574STRING: ENSP00000329757
UBCENSP000003448184STRING: ENSP00000344818
ELAVL1ENSP000003852694STRING: ENSP00000385269
About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016567protein ubiquitination IDA18298843


RNF182 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for RNF182
Search CenterWatch for drugs/clinical trials and news about RNF182 / RN182 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for RNF182 gene (4 alternative transcripts): 
NM_001165032.1  NM_001165033.1  NM_001165034.1  NM_152737.3  

Unigene Cluster for RNF182:

Ring finger protein 182
Hs.111164  [show with all ESTs]
Unigene Representative Sequence: NM_001165032
8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000488763 ENST00000488300(uc003nbe.3 uc003nbf.3) ENST00000420478
ENST00000471906 ENST00000423553 ENST00000537663(uc021ylw.1) ENST00000544682(uc021ylx.1)
ENST00000537388(uc003nbg.3)

miRNA
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SwitchGear 3'UTR luciferase reporter plasmidRNF182 3' UTR sequence
Inhib. RNA
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Clone
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNF182

Additional cDNA sequence: 

AK090576.1 AK098091.1 AK315528.1 BC030666.1 BC050030.1 

6 DOTS entries:

DT.100748263  DT.401959  DT.95265259  DT.430538  DT.121394263  DT.121394264 

24/42 AceView cDNA sequences (see all 42):

BU688477 AI361053 AA599692 BF196765 AI743910 BU678155 AI370991 BE504513 
NM_152737 AK098091 BM546508 BC030666 AW731636 BC050030 BU945333 AI884906 
AX746519 BQ187566 BI552264 AK090576 AW054717 AI912104 BF129987 BI544248 

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for RNF182    About this scheme

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c
SP1:                                                      
SP2:        -     -     -     -                           
SP3:                          -                           
SP4:                          -                           


ECgene alternative splicing isoforms for RNF182

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RNF182 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTATTGAATG

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)

About this image

RNF182 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell 
Tissue Anatomical Compartment CellCategory (developmental path)
AdiposeInterscapular Brown Adipose DepotAdipose
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization
Stem Cell Differentiation: 2 LifeMap Cells 
NameCategory
PureStem™ progenitor U31 (Embryonic Progenitor Cell)
Posterior foregut-like cells (A scalable, suspensi...)

See RNF182 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RNF182

SOURCE GeneReport for Unigene cluster: Hs.111164

UniProtKB/Swiss-Prot: RN182_HUMAN, Q8N6D2
Tissue specificity: Up-regulated in neuronal cells subjected to cell death-inducing injuries, such as oxygen and
glucose deprivation (at protein level). Could be up-regulated in Alzheimer disease brains

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF182

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for RNF182 gene from 5/11 species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Rnf1821 , 5 ring finger protein 1821, 5 88.53(n)1
98.38(a)1
  13 (21.60 cM)5
3282341  NM_183204.41  NP_899027.11 
 436157105 
chicken
(Gallus gallus)
Aves RNF1821 ring finger protein 182 82.1(n)
90.98(a)
  771221  XM_001234513.1  XP_001234514.1 
lizard
(Anolis carolinensis)
Reptilia RNF1826
--
--
90(a)
32(a)
1 ↔ 1
possible ortholog
4(57230499-57231239)
GL343741.1(223723-224535)
African clawed frog
(Xenopus laevis)
Amphibia Xl.178932 Xenopus laevis transcribed sequence 84.97(n)    BG812190.1 
zebrafish
(Danio rerio)
Actinopterygii zgc:1534141 zgc:153414 58.12(n)
56.72(a)
  751631  NM_001045351.1  NP_001038816.1 


ENSEMBL Gene Tree for RNF182 (if available)
TreeFam Gene Tree for RNF182 (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for RNF182 gene
RNF1522  
1 SIMAP similar gene for RNF182 using alignment to 5 protein entries:     RN182_HUMAN (see all proteins):
RNF152

RNF182 for paralogs           About GeneDecksing


1 Pseudogenes.org Pseudogene for RNF182
PGOHUM00000240530


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/919 NCBI SNPs in RNF182 are shown (see all 919    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1427513821,2
--13922684(+) TATTGA/TTCCAA 1 -- us2k10--------
rs1510365271,2
--13922813(+) AAATTC/GATTAT 1 -- us2k10--------
rs761588771,2
F,--13922868(+) TGTATC/TCACAC 1 -- us2k11Minor allele frequency- T:0.03WA 118
rs1409530581,2
--13923147(+) ACAACA/GTGGAC 3 -- us2k10--------
rs1148346791,2
C,F,--13923360(+) TACATC/TGTAAG 3 -- us2k11Minor allele frequency- T:0.02NA 120
rs592477691,2
F,--13923919(+) AGGAAC/AAAACT 4 -- us2k11Minor allele frequency- A:0.04WA 118
rs1821405451,2
--13923947(+) TGAAAC/TAGATC 4 -- us2k10--------
rs4115011,2
C,F,A,H,--13923976(+) ATATAT/GGTGTA 4 -- us2k123Minor allele frequency- G:0.14NS EA NA WA CSA 1329
rs728331391,2
C,--13924160(+) GGATTC/TAGCAA 4 -- us2k12Minor allele frequency- T:0.04NA 122
rs793195111,2
C,F,--13924248(+) GAAGCA/GTGACC 4 -- us2k11Minor allele frequency- G:0.03WA 118

HapMap Linkage Disequilibrium report for RNF182 (13924677 - 13980533 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for RNF182: --

SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNF182
DNA2.0 Custom Variant and Variant Library Synthesis for RNF182

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RNF182 for disorders           About GeneDecksing

2 diseases for RNF182:    About MalaCards
alzheimer's disease    neuronitis


Export disorders for RNF182 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for RNF182 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RNF182)
    Utopia: connect your pdf to the dynamic
world of online information

  1. A novel brain-enriched E3 ubiquitin ligase RNF182 is up regulated in the brains of Alzheimer's patients and targets ATP6V0C for degr adation. (PubMed id 18298843)1, 2 Liu Q.Y....Liu R. (2008)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
  5. A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. (PubMed id 19690564)1 van Wijk S.J....Timmers H.T. (2009)
  6. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
  7. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
  8. The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)2 Sjoeblom T.... Velculescu V.E. (2006)
  9. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
  10. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (2003)

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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 221687 HGNC: 28522 AceView: MGC33993 Ensembl:ENSG00000180537 euGenes: HUgn221687
ECgene: RNF182 H-InvDB: RNF182

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for RNF182 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for RNF182 gene:
Search GeneIP for patents involving RNF182

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