RNF165 Gene
protein-coding GIFtS : 44
GCID: GC18 P043914
ring finger protein 165
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Aliasesfor RNF165 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Ring Finger Protein 165 1 2 ARKL21 2
Export aliases for RNF165 gene to outside databases Previous GC identifers: GC18U900221 GC18P042169 GC18P040771
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Summariesfor RNF165 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for RNF165 : Encoded in regions involved in pericentric inversions in patients with bipolar affective disorder. (provided by RefSeq, Jul 2008)
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Genomic Viewsfor RNF165 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000018.9 NC_018929.1 NT_010966.14 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RNF165 gene promoter: Sox5 NF-1 NCX/Ncx HTF NF-AT GATA-2 SRY NF-AT3 Chx10 NF-AT1 Other transcription factors Search SABiosciences Chromatin IP Primers for RNF165 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RNF165
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 18q21.1 Ensembl cytogenetic band: 18q21.1 HGNC cytogenetic band: 18q21.1 RNF165 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 18 GeneLoc Exon Structure
GeneLoc location for GC18P043914: view genomic region
(about GC identifiers )
Start:
43,906,772 bp from pter
End:
44,043,103 bp from pter
Size:
136,332 bases
Orientation:
plus strand
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Proteinsfor RNF165 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RN165_HUMAN, Q6ZSG1 (See
protein sequence )Recommended Name: RING finger protein 165 Size : 346 amino acids; 39526 Da
Secondary accessions : B3KVD1Alternative splicing : 2 isoforms : Q6ZSG1-1 Q6ZSG1-2 Explore the universe of human proteins at neXtProt for RNF165: NX_Q6ZSG1 RNF165 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001243687.1 NP_689683.2 ENSEMBL proteins: ENSP00000467730 ENSP00000466208 ENSP00000466809 ENSP00000467609 ENSP00000464873 ENSP00000468365 ENSP00000269439 ENSP00000444285 Human Recombinant Protein Products: RNF165 Antibody Products: Assay Products for RNF165:
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Protein
Domains / Familiesfor RNF165 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RNF165 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6ZSG1 ProtoNet protein and cluster: Q6ZSG1
1 Blocks protein family : IPB001841 Zn-finger UniProtKB/Swiss-Prot: RN165_HUMAN, Q6ZSG1 Similarity : Contains 1 RING-type zinc finger
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Functionfor RNF165 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNF165 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNF165 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RNF165 (NM_152470 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RNF165 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNF165
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF165
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008270 zinc ion binding
IEA --
RNF165 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for RNF165 :
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Pathways & Interactionsfor RNF165 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNF165 STRING Interaction
Network Preview (showing 5 interactants - click image to see 8)5/9 Interacting proteins for RNF165 (Q6ZSG1 3 ENSP00000269439 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 9 )About this table
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Drugs & Compoundsfor RNF165 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RNF165 Search CenterWatch for drugs/clinical trials and news about RNF165 / RN165
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Transcriptsfor RNF165 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
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siRNAs from
OriGene ,
QIAGEN ,
shRNA from
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microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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)About This Section REFSEQ mRNAs for RNF165 gene (2 alternative transcripts): NM_001256758.1 NM_152470.2 Unigene Cluster for RNF165:
Ring finger protein 165 Hs.501114 [show with all ESTs ] Unigene Representative Sequence: NM_152470 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000593230 ENST00000587853 ENST00000590330 ENST00000588679 ENST00000592129 ENST00000586604 ENST00000269439 (uc002lby.1 uc002lcb.1 uc010dnn.1 )ENST00000592777 ENST00000543885 (uc002lca.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNF165 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNF165 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RNF165 (NM_152470 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RNF165 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNF165
Additional cDNA sequence: AK055997.1 AK074561.1 AK096648.1 AK122819.1 AK123883.1 AK127467.1 BC012190.1 NR_046357.1
5 DOTS entries : DT.97803328 DT.80102033
DT.91724792 DT.100017417 DT.100017416 GeneLoc Exon Structure
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Expression for RNF165 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RNF165 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ACGACATTGT
About this image RNF165 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See RNF165 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RNF165 SOURCE GeneReport for Unigene cluster: Hs.501114 SABiosciences Custom PCR Arrays for RNF165 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RNF165Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat RNF165 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RNF165 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RNF165 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF165
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Orthologsfor RNF165 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for RNF165 gene from 7/19 species (see all 19 ) About this table
ENSEMBL Gene Tree for RNF165 (if available)TreeFam Gene Tree for RNF165 (if available)
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Paralogsfor RNF165 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RNF165 gene RNF6 2 RNF11 2 RNF38 2 RLIM 2 RNF44 2 RNF111 2 1 SIMAP similar gene for RNF165 using alignment to 5 protein entries: RN165_HUMAN (see all proteins ):RNF111
RNF165 for paralogs About GeneDecksing
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Genomic Variantsfor RNF165 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 18 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RNF165 (43906772 - 44043103 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for RNF165 2 CNVs : 73138 88824 1 Indel : 73137
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RNF165
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Disorders
/ Diseasesfor RNF165 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RNF165 for disorders About GeneDecksing 1 disease for RNF165 : About MalaCards bipolar affective disorder Human Genome Epidemiology (HuGE) Navigator: RNF165 (1 document)Export disorders for RNF165 gene to outside databases
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Publicationsfor RNF165 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RNF165 gene integrated from 9 sources : (articles sorted by number of sources associating them with RNF165) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. (PubMed id 19690564) 1 van Wijk S.J....Timmers H.T. (2009) Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. (PubMed id 19159218) 2 Chen R.... Zou H. (2009) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) DNA sequence and analysis of human chromosome 18. (PubMed id 16177791) 2 Nusbaum C.... Lander E.S. (2005) Candidate psychiatric illness genes identified in patients with pericentric inversions of chromosome 18. (PubMed id 15722956) 1 Pickard B.S.... Muir W.J. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548) 1 Bonaldo M.F.... Soares M.B. (1996)
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External Searches for RNF165 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RNF165 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RNF165 gene
(According to HUGE )
About This Section --
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Specialized Databases showing RNF165 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for RNF165 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for RNF165 gene: Search GeneIP for patents involving RNF165 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RNF165 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for RNF165 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RNF165 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RNF165 OriGene Protein Over-expression Lysate for RNF165 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for RNF165 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNF165 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNF165 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for RNF165 OriGene Custom Protein Services for RNF165 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNF165 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RNF165 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RNF165 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RNF165 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RNF165 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RNF165
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF165
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Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNF165
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Expression for RNF165
Function for RNF165
Genomic Views for RNF165
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