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Aliases for RNF157-AS1 Gene

Subcategory (RNA class) for RNF157-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF157-AS1 Gene

  • RNF157 Antisense RNA 1 2 3
  • RNF157 Antisense RNA 1 (Non-Protein Coding) 2
  • RP11-449J21.5 5

External Ids for RNF157-AS1 Gene

Previous GeneCards Identifiers for RNF157-AS1 Gene

  • GC17P074138

Summaries for RNF157-AS1 Gene

GeneCards Summary for RNF157-AS1 Gene

RNF157-AS1 (RNF157 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF157-AS1 Gene

Genomics for RNF157-AS1 Gene

Regulatory Elements for RNF157-AS1 Gene

Enhancers for RNF157-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F076138 1.1 FANTOM5 ENCODE 9.2 -1.9 -1863 1.3 ZFP64 ARID4B DMAP1 ZNF48 GLIS2 SP5 NFYC ZHX2 MXD4 PPARG RNF157-AS1 FOXJ1 PRPSAP1 ZACN RECQL5 GC17M076139 PIR38709
GH17F076144 0.9 Ensembl ENCODE 7.6 +5.7 5717 3.2 ZNF263 CTCF THRB ZIC2 ZNF2 RAD21 ZNF274 POLR2A SCRT2 MBD1 RNF157-AS1 PIR45761 PIR47897
GH17F076131 1.5 FANTOM5 Ensembl ENCODE 6.9 -8.1 -8094 1.7 ELF3 ARID4B DMAP1 THRB ZNF48 RAD21 ETS1 RARA SLC30A9 EGR2 FOXJ1 RNF157-AS1 RECQL5 LOC101928447 GC17M076123
GH17F076151 0.5 ENCODE 6.9 +11.5 11528 1.6 CTCF ZNF316 POLR2A SMARCA4 MLLT1 ZIC2 RAD21 EXOC7 RNF157-AS1 RNF157 PIR47897 PIR45761
GH17F076153 1 ENCODE 6.5 +12.7 12679 0.2 ZNF366 EXOC7 RNF157-AS1 GC17P076156 PIR32084 PIR47897
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNF157-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF157-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001810010 744 601 PKNOX1 ZFP64 ARID4B SIN3A ZNF48 ZNF2 ZNF121 GLIS2 FOS SP3

Genomic Location for RNF157-AS1 Gene

Chromosome:
17
Start:
76,140,556 bp from pter
End:
76,154,650 bp from pter
Size:
14,095 bases
Orientation:
Plus strand

Genomic View for RNF157-AS1 Gene

Genes around RNF157-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF157-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF157-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF157-AS1 Gene

Proteins for RNF157-AS1 Gene

Post-translational modifications for RNF157-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF157-AS1 Gene

Domains & Families for RNF157-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF157-AS1 Gene

Function for RNF157-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF157-AS1 Gene

Localization for RNF157-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF157-AS1 Gene

Pathways & Interactions for RNF157-AS1 Gene

SuperPathways for RNF157-AS1 Gene

No Data Available

Interacting Proteins for RNF157-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF157-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF157-AS1 Gene

Transcripts for RNF157-AS1 Gene

mRNA/cDNA for RNF157-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF157-AS1 Gene

RNF157 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF157-AS1 Gene

No ASD Table

Relevant External Links for RNF157-AS1 Gene

GeneLoc Exon Structure for
RNF157-AS1
ECgene alternative splicing isoforms for
RNF157-AS1

Expression for RNF157-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNF157-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF157-AS1 Gene

This gene is overexpressed in Brain - Cortex (x4.7) and Brain - Frontal Cortex (BA9) (x4.1).

SOURCE GeneReport for Unigene cluster for RNF157-AS1 Gene:

Hs.654866
genes like me logo Genes that share expression patterns with RNF157-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF157-AS1 Gene

Orthologs for RNF157-AS1 Gene

Evolution for RNF157-AS1 Gene

ENSEMBL:
Gene Tree for RNF157-AS1 (if available)
TreeFam:
Gene Tree for RNF157-AS1 (if available)

No data available for Orthologs for RNF157-AS1 Gene

Paralogs for RNF157-AS1 Gene

No data available for Paralogs for RNF157-AS1 Gene

Variants for RNF157-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF157-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111291398 -- 76,153,956(+) CCACT(A/G)AAAAC intron-variant
rs111338172 -- 76,139,995(+) CCTGC(A/T)TGGCC upstream-variant-2KB, reference, missense
rs111436096 -- 76,145,104(+) GGTTA(C/T)AGGTT intron-variant, downstream-variant-500B, utr-variant-3-prime
rs111912783 -- 76,153,123(+) TTCTC(-/A)GTGAA intron-variant
rs112057189 -- 76,147,881(+) GTCTC(A/G)GTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF157-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv2144 CNV insertion 18451855
nsv833546 CNV loss 17160897

Relevant External Links for RNF157-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF157-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF157-AS1 Gene

Disorders for RNF157-AS1 Gene

Relevant External Links for RNF157-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF157-AS1

No disorders were found for RNF157-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF157-AS1 Gene

Publications for RNF157-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for RNF157-AS1 Gene

Sources for RNF157-AS1 Gene

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