Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNF144A-AS1 Gene

Subcategory (RNA class) for RNF144A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF144A-AS1 Gene

  • RNF144A Antisense RNA 1 2 3 5
  • RNF144A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RNF144A-AS1 Gene

Previous GeneCards Identifiers for RNF144A-AS1 Gene

  • GC02M007054

Summaries for RNF144A-AS1 Gene

GeneCards Summary for RNF144A-AS1 Gene

RNF144A-AS1 (RNF144A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF144A-AS1 Gene

Genomics for RNF144A-AS1 Gene

Regulatory Elements for RNF144A-AS1 Gene

Enhancers for RNF144A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G006964 0.7 dbSUPER 26.9 -51.2 -51219 10.0 CTCF FOXA2 MTA2 HLF BHLHE40 ZMYM3 RAD21 ARID3A JUND SMARCA4 RNF144A-AS1 RNF144A GC02M007018
GH02G007007 1.5 Ensembl ENCODE dbSUPER 12.3 -91.5 -91463 6.3 PKNOX1 ATF1 CREB3L1 ARNT SIN3A ZNF766 CBX5 ELK1 GATA2 FOS RNF144A RNF144A-AS1 GC02M007018
GH02G006879 1.4 Ensembl ENCODE dbSUPER 11.5 +37.7 37717 2.6 PKNOX1 ATF1 ARNT TCF12 ZNF766 CBX5 GATA2 NCOA1 REST CREB3 RNF144A-AS1 RNF144A CMPK2 GC02P006897
GH02G007013 1.3 Ensembl ENCODE dbSUPER 12 -97.3 -97315 4.4 CTCF PKNOX1 ESRRA SIN3A MAX RAD21 ZNF507 CTBP1 GATA3 POLR2A RNF144A RNF144A-AS1 GC02M007018
GH02G006985 1.2 Ensembl ENCODE dbSUPER 12.7 -68.2 -68157 1.8 SOX5 ZNF146 FOXA2 RFX1 FOXA3 CEBPB CEBPG BMI1 HMBOX1 PCBP1 RNF144A-AS1 RNF144A GC02M007018
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNF144A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF144A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000112233 809 1801 HDAC1 RB1 FUS ZFP64 SIN3A RAD21 RARA ZNF766 EGR1 RELB

Genomic Location for RNF144A-AS1 Gene

Chromosome:
2
Start:
6,912,276 bp from pter
End:
6,918,709 bp from pter
Size:
6,434 bases
Orientation:
Minus strand

Genomic View for RNF144A-AS1 Gene

Genes around RNF144A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF144A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF144A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF144A-AS1 Gene

Proteins for RNF144A-AS1 Gene

Post-translational modifications for RNF144A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF144A-AS1 Gene

Domains & Families for RNF144A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF144A-AS1 Gene

Function for RNF144A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF144A-AS1 Gene

Localization for RNF144A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF144A-AS1 Gene

Pathways & Interactions for RNF144A-AS1 Gene

SuperPathways for RNF144A-AS1 Gene

No Data Available

Interacting Proteins for RNF144A-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF144A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF144A-AS1 Gene

Drugs & Compounds for RNF144A-AS1 Gene

No Compound Related Data Available

Transcripts for RNF144A-AS1 Gene

mRNA/cDNA for RNF144A-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF144A-AS1 Gene

RNF144A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF144A-AS1 Gene

No ASD Table

Relevant External Links for RNF144A-AS1 Gene

GeneLoc Exon Structure for
RNF144A-AS1
ECgene alternative splicing isoforms for
RNF144A-AS1

Expression for RNF144A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF144A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF144A-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Putamen (basal ganglia) (x4.4), Pancreas (x4.2), Brain - Caudate (basal ganglia) (x4.0), and Brain - Cortex (x4.0).

SOURCE GeneReport for Unigene cluster for RNF144A-AS1 Gene:

Hs.559010
genes like me logo Genes that share expression patterns with RNF144A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF144A-AS1 Gene

Orthologs for RNF144A-AS1 Gene

Evolution for RNF144A-AS1 Gene

ENSEMBL:
Gene Tree for RNF144A-AS1 (if available)
TreeFam:
Gene Tree for RNF144A-AS1 (if available)

No data available for Orthologs for RNF144A-AS1 Gene

Paralogs for RNF144A-AS1 Gene

No data available for Paralogs for RNF144A-AS1 Gene

Variants for RNF144A-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF144A-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1001307245 -- 6,917,626(+) AGGTA(A/G)AGTGA intron-variant, upstream-variant-2KB
rs1001806723 -- 6,917,946(+) CCCCC(-/T)GCCTG intron-variant, upstream-variant-2KB
rs1002281312 -- 6,918,117(+) GCGTC(C/T)GGGGC intron-variant, upstream-variant-2KB
rs1002303012 -- 6,918,175(+) ACATC(C/T)CCTGC intron-variant, upstream-variant-2KB
rs1003155780 -- 6,913,747(+) CAGAC(A/G)AGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF144A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv24593 CNV loss 19812545
nsv1118850 CNV deletion 24896259
nsv580912 CNV loss 21841781
nsv580913 CNV gain 21841781
nsv833326 CNV loss 17160897

Relevant External Links for RNF144A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF144A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF144A-AS1 Gene

Disorders for RNF144A-AS1 Gene

Relevant External Links for RNF144A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF144A-AS1

No disorders were found for RNF144A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF144A-AS1 Gene

Publications for RNF144A-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for RNF144A-AS1 Gene

Sources for RNF144A-AS1 Gene

Content
Loading form....