Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNF139-AS1 Gene

Subcategory (RNA class) for RNF139-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF139-AS1 Gene

  • RNF139 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for RNF139-AS1 Gene

Previous GeneCards Identifiers for RNF139-AS1 Gene

  • GC08M125477

Summaries for RNF139-AS1 Gene

GeneCards Summary for RNF139-AS1 Gene

RNF139-AS1 (RNF139 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RNF139-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF139-AS1 Gene

Genomics for RNF139-AS1 Gene

GeneHancer (GH) Regulatory Elements for RNF139-AS1 Gene

Promoters and enhancers for RNF139-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I124471 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.3 319 5.8 CLOCK MLX DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC GLIS1 RNF139 RNF139-AS1 TRMT12 WASHC5-AS1 FAM91A1 WASHC5 TATDN1 LOC105375740 GC08M124446 GC08P124382
GH08I124194 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 22.3 +276.2 276227 8.7 HDGF PKNOX1 ARNT NEUROD1 SIN3A FEZF1 YBX1 ZNF2 ZBTB7B IRF4 TRMT12 FAM91A1 TMEM65 WASHC5 WASHC5-AS1 RNF139-AS1 ZNF572 RNF139 NSMCE2 FER1L6-AS2
GH08I123534 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.1 +936.0 936011 9 PKNOX1 ARID4B SIN3A FEZF1 ZBTB7B GLIS2 ZNF213 SP3 MXD4 KAT8 FBXO32 LOC105375738 ANXA13 RNF139-AS1 ATAD2 WDYHV1 GC08M123523
GH08I124996 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.1 -524.9 -524885 5.3 PKNOX1 CLOCK ARID4B SIN3A FEZF1 DMAP1 ZBTB7B POLR2B ZNF207 ZNF143 LOC105375744 SQLE TRMT12 RNF139 LOC105375740 RNF139-AS1 LINC00964 TATDN1 GC08P125034
GH08I124537 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.3 -64.3 -64324 3.2 HDGF PKNOX1 CLOCK SMAD1 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 NDUFB9 TATDN1 TRMT12 FAM91A1 WASHC5 WASHC5-AS1 RNF139 RNF139-AS1 LOC105375740 MIR6844
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNF139-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF139-AS1 Gene

Genomic Locations for RNF139-AS1 Gene
chr8:124,462,485-124,474,576
(GRCh38/hg38)
Size:
12,092 bases
Orientation:
Minus strand
chr8:125,474,726-125,486,817
(GRCh37/hg19)

Genomic View for RNF139-AS1 Gene

Genes around RNF139-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF139-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF139-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF139-AS1 Gene

Proteins for RNF139-AS1 Gene

Post-translational modifications for RNF139-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF139-AS1 Gene

Domains & Families for RNF139-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF139-AS1 Gene

Function for RNF139-AS1 Gene

Phenotypes From GWAS Catalog for RNF139-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF139-AS1 Gene

Localization for RNF139-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF139-AS1 Gene

Pathways & Interactions for RNF139-AS1 Gene

SuperPathways for RNF139-AS1 Gene

No Data Available

Interacting Proteins for RNF139-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF139-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF139-AS1 Gene

Drugs & Compounds for RNF139-AS1 Gene

No Compound Related Data Available

Transcripts for RNF139-AS1 Gene

mRNA/cDNA for RNF139-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF139-AS1 Gene

No ASD Table

Relevant External Links for RNF139-AS1 Gene

GeneLoc Exon Structure for
RNF139-AS1
ECgene alternative splicing isoforms for
RNF139-AS1

Expression for RNF139-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF139-AS1 Gene

genes like me logo Genes that share expression patterns with RNF139-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF139-AS1 Gene

Orthologs for RNF139-AS1 Gene

Evolution for RNF139-AS1 Gene

ENSEMBL:
Gene Tree for RNF139-AS1 (if available)
TreeFam:
Gene Tree for RNF139-AS1 (if available)

No data available for Orthologs for RNF139-AS1 Gene

Paralogs for RNF139-AS1 Gene

No data available for Paralogs for RNF139-AS1 Gene

Variants for RNF139-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF139-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000379997 -- 124,464,701(-) T/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000432416 -- 124,464,510(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000716699 -- 124,463,068(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000778760 -- 124,462,704(-) G/C genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000889787 -- 124,469,709(-) T/C genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF139-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1414e214 CNV gain 21293372
esv2762769 CNV gain 21179565
nsv1017848 CNV gain 25217958
nsv1034768 CNV gain 25217958

Additional Variant Information for RNF139-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF139-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF139-AS1 Gene

Disorders for RNF139-AS1 Gene

Additional Disease Information for RNF139-AS1

No disorders were found for RNF139-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF139-AS1 Gene

Publications for RNF139-AS1 Gene

No publications were found for RNF139-AS1 Gene.

Products for RNF139-AS1 Gene

Sources for RNF139-AS1 Gene

Content
Loading form....