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Aliases for RNF139-AS1 Gene

Subcategory (RNA class) for RNF139-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF139-AS1 Gene

  • RNF139 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for RNF139-AS1 Gene

Previous GeneCards Identifiers for RNF139-AS1 Gene

  • GC08M125477

Summaries for RNF139-AS1 Gene

GeneCards Summary for RNF139-AS1 Gene

RNF139-AS1 (RNF139 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF139-AS1 Gene

Genomics for RNF139-AS1 Gene

Regulatory Elements for RNF139-AS1 Gene

Enhancers for RNF139-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F125270 1.1 FANTOM5 Ensembl ENCODE 23.2 -799.3 -799342 7.0 PKNOX1 FEZF1 CBX5 FOS ZNF263 JUNB TBX21 ZNF585B RFX3 SMARCA4 TRIB1 RNF139-AS1 ENSG00000253106 ENSG00000254431 TRMT12 NSMCE2 WASHC5 RN7SL329P
GH08F124194 0.8 FANTOM5 Ensembl ENCODE 19.1 +276.2 276227 8.7 HDGF PKNOX1 ARNT SIN3A FEZF1 YBX1 ZNF2 CBX5 ZNF207 FOS TRMT12 TMEM65 NSMCE2 RNF139-AS1 RNF139 FER1L6-AS2 RNU6-756P ENSG00000254249 FER1L6-AS1 ENSG00000253106
GH08F124449 0.7 ENCODE 15.3 +23.7 23653 2.2 PKNOX1 WRNIP1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 KLF13 SP3 TRMT12 RNF139-AS1 NSMCE2 ENSG00000253106 LOC105375740 GC08M124446
GH08F124633 1.6 FANTOM5 Ensembl ENCODE 15.1 -164.9 -164947 11.3 HDGF PKNOX1 WRNIP1 ZFP64 SIN3A FEZF1 CBX5 ZNF207 FOS JUNB RNF139-AS1 MTSS1 ENSG00000253106 ZNF572 RNF139 GC08P124592 GC08P124718
GH08F124625 1.4 FANTOM5 Ensembl ENCODE 15.1 -154.2 -154150 7.0 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 RNF139-AS1 MTSS1 LOC105375744 SQLE NSMCE2 TRMT12 RNF139 WASHC5 ZNF572 GC08P124592
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNF139-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF139-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001400836 -24 4801 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1

Genomic Location for RNF139-AS1 Gene

Chromosome:
8
Start:
124,462,485 bp from pter
End:
124,474,576 bp from pter
Size:
12,092 bases
Orientation:
Minus strand

Genomic View for RNF139-AS1 Gene

Genes around RNF139-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF139-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF139-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF139-AS1 Gene

Proteins for RNF139-AS1 Gene

Post-translational modifications for RNF139-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF139-AS1 Gene

Domains & Families for RNF139-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF139-AS1 Gene

Function for RNF139-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF139-AS1 Gene

Localization for RNF139-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF139-AS1 Gene

Pathways & Interactions for RNF139-AS1 Gene

SuperPathways for RNF139-AS1 Gene

No Data Available

Interacting Proteins for RNF139-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF139-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF139-AS1 Gene

Transcripts for RNF139-AS1 Gene

mRNA/cDNA for RNF139-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF139-AS1 Gene

No ASD Table

Relevant External Links for RNF139-AS1 Gene

GeneLoc Exon Structure for
RNF139-AS1
ECgene alternative splicing isoforms for
RNF139-AS1

Expression for RNF139-AS1 Gene

mRNA expression in normal human tissues for RNF139-AS1 Gene

genes like me logo Genes that share expression patterns with RNF139-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF139-AS1 Gene

Orthologs for RNF139-AS1 Gene

Evolution for RNF139-AS1 Gene

ENSEMBL:
Gene Tree for RNF139-AS1 (if available)
TreeFam:
Gene Tree for RNF139-AS1 (if available)

No data available for Orthologs for RNF139-AS1 Gene

Paralogs for RNF139-AS1 Gene

No data available for Paralogs for RNF139-AS1 Gene

Variants for RNF139-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF139-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10105517 -- 124,465,556(+) CAACT(G/T)TGTGT nc-transcript-variant
rs10112004 -- 124,466,616(+) ATAAC(C/T)GAGAA nc-transcript-variant
rs10112824 -- 124,467,321(+) ATCCC(C/T)GCAAC nc-transcript-variant
rs10956185 -- 124,473,487(+) AACCT(G/T)GTCAT intron-variant, upstream-variant-2KB
rs111534026 -- 124,471,116(+) CAAAA(G/T)CTTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF139-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1414e214 CNV gain 21293372
esv2762769 CNV gain 21179565
nsv1017848 CNV gain 25217958
nsv1034768 CNV gain 25217958

Relevant External Links for RNF139-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF139-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF139-AS1 Gene

Disorders for RNF139-AS1 Gene

Relevant External Links for RNF139-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF139-AS1

No disorders were found for RNF139-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF139-AS1 Gene

Publications for RNF139-AS1 Gene

No publications were found for RNF139-AS1 Gene.

Products for RNF139-AS1 Gene

Sources for RNF139-AS1 Gene

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