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Aliases for RNF139-AS1 Gene

Subcategory (RNA class) for RNF139-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF139-AS1 Gene

  • RNF139 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for RNF139-AS1 Gene

Previous GeneCards Identifiers for RNF139-AS1 Gene

  • GC08M125477

Summaries for RNF139-AS1 Gene

GeneCards Summary for RNF139-AS1 Gene

RNF139-AS1 (RNF139 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF139-AS1 Gene

Genomics for RNF139-AS1 Gene

Regulatory Elements for RNF139-AS1 Gene

Enhancers for RNF139-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G124194 2 FANTOM5 Ensembl ENCODE dbSUPER 30.9 +276.2 276227 8.7 HDGF PKNOX1 ARNT SIN3A FEZF1 YBX1 ZNF2 ZBTB7B ZNF766 CBX5 TMEM65 RNF139-AS1 ZNF572 ENSG00000253106 FER1L6-AS2 WASHC5-AS1 TRMT12 RNU6-756P ENSG00000254249 FER1L6-AS1
GH08G125270 2 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -798.0 -798025 4.3 PKNOX1 ARNT FEZF1 CBX5 FOS ZNF263 JUNB TBX21 ZNF592 ZNF585B TRIB1 ENSG00000254431 TRMT12 ENSG00000253106 RNF139-AS1 WASHC5-AS1 NSMCE2 WASHC5 RN7SL329P
GH08G123534 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +936.0 936012 9.0 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZBTB7B GLIS2 FOS SP3 MXD4 LOC105375738 ANXA13 RNF139-AS1 WDYHV1 ATAD2 FBXO32 GC08M123523
GH08G125232 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -758.0 -757989 1.5 FOXA2 ARID4B SIN3A BRCA1 FOS KAT8 SREBF1 MIER3 MAFF RCOR2 TRIB1 LINC00964 ENSG00000253106 RNF139-AS1 WASHC5 NSMCE2 RN7SL329P
GH08G124471 1.4 ENCODE dbSUPER 11.1 +0.3 319 5.8 MLX CREB3L1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 GLIS1 NBN TRMT12 WASHC5-AS1 ENSG00000253106 RNF139-AS1 LOC105375740 GC08M124446
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNF139-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF139-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000230141 -124 4201 MLX CREB3L1 FEZF1 DMAP1 YY1 ZNF143 SP3 TBX21 GLIS1 NBN

Genomic Location for RNF139-AS1 Gene

Chromosome:
8
Start:
124,462,485 bp from pter
End:
124,474,576 bp from pter
Size:
12,092 bases
Orientation:
Minus strand

Genomic View for RNF139-AS1 Gene

Genes around RNF139-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF139-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF139-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF139-AS1 Gene

Proteins for RNF139-AS1 Gene

Post-translational modifications for RNF139-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF139-AS1 Gene

Domains & Families for RNF139-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF139-AS1 Gene

Function for RNF139-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF139-AS1 Gene

Localization for RNF139-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF139-AS1 Gene

Pathways & Interactions for RNF139-AS1 Gene

SuperPathways for RNF139-AS1 Gene

No Data Available

Interacting Proteins for RNF139-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF139-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF139-AS1 Gene

Drugs & Compounds for RNF139-AS1 Gene

No Compound Related Data Available

Transcripts for RNF139-AS1 Gene

mRNA/cDNA for RNF139-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF139-AS1 Gene

No ASD Table

Relevant External Links for RNF139-AS1 Gene

GeneLoc Exon Structure for
RNF139-AS1
ECgene alternative splicing isoforms for
RNF139-AS1

Expression for RNF139-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF139-AS1 Gene

genes like me logo Genes that share expression patterns with RNF139-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF139-AS1 Gene

Orthologs for RNF139-AS1 Gene

Evolution for RNF139-AS1 Gene

ENSEMBL:
Gene Tree for RNF139-AS1 (if available)
TreeFam:
Gene Tree for RNF139-AS1 (if available)

No data available for Orthologs for RNF139-AS1 Gene

Paralogs for RNF139-AS1 Gene

No data available for Paralogs for RNF139-AS1 Gene

Variants for RNF139-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF139-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000379997 -- 124,464,701(+) GTGAA(A/T)AATAA nc-transcript-variant
rs1000432416 -- 124,464,510(+) GTCCT(A/G)AGAGT nc-transcript-variant
rs1000716699 -- 124,463,068(+) TGTGA(A/G)CCACT nc-transcript-variant
rs1000778760 -- 124,462,704(+) ACATG(C/G)AATAT nc-transcript-variant
rs1000889787 -- 124,469,709(+) GTAGA(C/T)AACCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF139-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1414e214 CNV gain 21293372
esv2762769 CNV gain 21179565
nsv1017848 CNV gain 25217958
nsv1034768 CNV gain 25217958

Relevant External Links for RNF139-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF139-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF139-AS1 Gene

Disorders for RNF139-AS1 Gene

Relevant External Links for RNF139-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF139-AS1

No disorders were found for RNF139-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF139-AS1 Gene

Publications for RNF139-AS1 Gene

No publications were found for RNF139-AS1 Gene.

Products for RNF139-AS1 Gene

Sources for RNF139-AS1 Gene

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